Sequence
atgc intronic sequence ATGC exonic sequence...atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgatttaaagaaagagacacatatctaatcctgtttgatcaacactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 21
--atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgatttaaagaaagagacacatatctaatcctgtttgatcaacac----------tatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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gtaatttcttaatcttctgctcttatctttgcattgaaaagtgtgcttccatccagaaaacattttctgttattgttctggttttatctattcatatgttccttctgtacagGTTAATCCAAAAGCTGCAGAGTCTCTGGCAGATCCTTCTGAGTATCCAAATTTATTTGAAGACTGGCAGGTTGCACTTACTGTAGAAAAGAATGTTGCTT
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 20
---atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgatttaaagaaagag---acacatatctaatcctgtttgatca-acactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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gtaatttcttaatgttctcatcttagtcttctttctgaaaagtgtggtgccattagaaaaaaatgcatgctattatcttattctttttttctgtaccttgtatgcagATTAATCCAAAAGCTGCAGAGTCTCTGGCAGATCCTTCTGAATATCCAAATTTATTTGAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTT
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA07G03890.2 (Glycine max), 3'ss of exon 10
--------atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgatttaaagaaagagacacatatctaatcctgtttgatcaacactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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ctcattccattggcctgccctgtc--ctggattcttatcatgctacagattgcatg--tgaaataaaaatataaattctta----tatttagttgttaatatgcacagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAATTTGTTTGATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGG
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 21
-----------------------------------------------------------------------------------------------atatgcctgcttgggtagttggatctatttca----tttaacttttcttgtgatttaaa-gaaagagacacatatctaatcctgtttgatcaacactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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gtaatgttatatatatatatatatatatatatataatttagcaacggaatagcctgacatttatgttgtgcacatgatactgtgggtaggaacttctgttctcattccattggcctgccctgtcctggattcttatcatgctacatattgcatgtgaaataaaaatataaattcttatatttatttgttaatatgcacagGTTAATCCAAAAGCCGCCGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGATGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTACAG
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 21
-atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgat-ttaaagaaagagacacatatctaatcctgtttgatcaacactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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ggtaggagcatcagttctcattcatttgccttgtttgagtagtcttatcatgttgacgagtggctcatggattaaagagagtac-atatattttat-tgcagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGATTGGCAGGTTGCACTAGCTGTCGAATCTAAAGCTGTGG
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 21
atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgat-ttaaagaaagagacacatatctaatcctgtttgatca---acactatat-gcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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---agcatccgttctcattc--atttgccttgtttgggtagtcttatcatgttgacaagtgacttatggattaaagagagtacgtatacgtatattttgttgcagGTCAATCCAAAAGCTGCTGAATCATTGGCTAATCCTGAAGAATATCCAAATTTGTTTGAAGATTGGCAAGTTGCACTAGCTGTCGAATCTAAAGCTGTGG
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 21
atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgatttaaagaaagagacacatatctaatcctgtttgatcaacactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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-------------gttattttcgcatcttttttttg-tttactgtgtcaatgagaaaattcatcatgtggct--ttaaattgcctttgacttgtcatcagGTTAATCCAAAAGCAGCTGAATCTTTAGCTGATCCTGAAGAGTACTCAAATCTTTTTGAGGATTGGCAAGTTGCTCTTTCTGTTGAAGCGAACACTGCAG
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 25
atatgcctgcttgggtagttggatctatttc---atttaacttttcttgtgatttaaagaaagagacaca-tatctaatcctgtttgatcaacactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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--gttagtggtagacacatccgatgcaccttgtgattgaatttcaaaccttgcctgttgagatatccacaatttttcttcatcctctgtcaat-ctggatatagATAAGTCCAAAGGCTGCTGAATCTCTGGCTGATCCCGAAGAGTATCCCAATCTCTTTGAGGAGTGGCAAGTCGCCCTGTCCCTTGAAAATAGAGCTGCAG
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 21
atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgatttaaagaaagagacacatatctaatcctgtttgatcaacact-atatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
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----------------gttcctttcaaatctttttaggttttagtgtaatgtggtcaaggagacaagttgtgggtttaagttaccttgcacttgaatacagGTTAATTCAAAAGCAGCAGAATCTTTGGCTGATCCTGAGGAGTACTCAAATCTTTTTGAAGATTGGCAAGTTGCTCTTTCTGTGGAAGCTAAAGCTGTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110728301|gb|EE103751.1|EE103751EST: AAGCAAGGTCTCAGAGATAGTCGCTCTGTGGGAGGAAAGACCTTAATAAG GTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCT
genomic: AAGCAAGGTCTCAGAGATAGTCGCTCTGTGG-AGGAAAGACCTTAATAAGgtaacttgac ... ctatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgatttaaagaaagagacacatatctaatcctgtttgatcaacactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
ttaaagaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatgcctgcttgggtagttggatctatttcatttaacttttcttgtgatttaaagaaagagacacatatctaatcctgtttgatcaacactatatgcagGTTAATCCAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCG
- - -cctgctt
- - - - - - - -tagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agacaca