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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaccagtctcagcttgcatattaatttcaatttggcattgatcagggattttgacagaattttgttcaactgaataaccacttgcagATTCATTACAACTTGACCATGAAGCATGTGGAAATCTTGATTCCATGATTGTTCCTTGTTGTGGGGATTTGAGGGAACTGAATAGCGGTCACTACCACAA

Basic information

species Vitis vinifera
transcript Vv06s0004g03810.t01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA13G40580.1 (Glycine max), 3'ss of exon 21
gtaagcaccagtctcagcttgcatattaatttcaatttggcattgatcagg--gattttgaca-gaattttgtt---caactgaataaccacttgcagATTCATTACAACTTGACCATGAAGCATGTGGAAATCTTGATTCCATGATTGTTCCTTGTTGTGGGGATTTGAGGGAACTGAATAGCGGTCACTACCACAA
|| || |        | ||     ||  ||       |    |||   |||  | |  |  || |||| |       ||| | || || ||||||||||||| || |||||||| |||||||| ||||| |||||  | || |||||  |||| || ||||| |||||||| ||||||||  | ||||| | ||||| 
gtcagtattttgtgaacctcttgcatctatgcatgactattgttgcctaggtaggtaataccatgaatgtcagctgacaagttaaaaaacacttgcagATTCGTTGCAACTTGATCATGAAGCTTGTGGGAATCTGAACTCTATGATCATTCCGTGCTGTGGTGATTTGAGAGAACTGAAGGGTGGTCATTTCCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|219555579|gb|FG984664.1|FG984664
EST:     ACTTGAAGATGTAGATGTTGCAAACAAGAATCTTCTTTCTTCCATTGATC                         ATTCATTACAACTTGACCATGAAGCATGTGGAAATCTTGATTCCATGATTG
genomic: ACTTGAAGATGTAGATGTTGCAAACAAGAATCTTCTTTCTTCCATTGATCgtaagcacca ... ccacttgcagATTCATTACAACTTGACCATGAAGCATGTGGAAATCTTGATTCCATGATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcattgatcagggattttgacagaattttgttcaactgaataaccacttgcagATTCATTACAACTTGACCATGAAGCATGTGGAAATCTTGATTCCATGATTGTTCCTTGTTGTGGGGATTTGAGGGAACTGAATAGCGGTCACTACCACAA
                                       gaataac  putative branch site (score: 2)
                         aattttgtt  TA-rich tract