Sequence
atgc intronic sequence ATGC exonic sequence...tgatcctattctttgcctaaatttatttgtttatttattaatttatgcattttaaacttttgcaaatctctttagagcttttgaactgttatgtccacagGGAAGACGATAAATGGTGGCTTTTGTCAACCATCCTTCTGCTCTTCAAGTCAATACAAGCTCGTTTTGTTGATTGGCACATAGCAAATCTAGAAATCCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 21
--tgatcctattctttgcctaaatt-tatttgtttatttattaatttatgcattttaaacttttgcaaatctctttagagcttttgaac-tgttatgtcc--acagGGAAGACGATAAATGGTGGCTTTTGTCAACCATCCTTCTGCTCTTCAAGTCAATACAAGCTCGTTTTGTTGATTGGCACATAGCAAATCTAGAAATCCAA
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actgctgagattcatcctgtggttggtgtttatttattt-ttggttaacaacttttggtgttc-----attattttcaagtcttggtacataacattctcttgcagGGAAGATGATAAGTGCTGGCTTTTGCCCATCATCCTTTTTCTATTCAAGTCAATACAGGCCCGTTTTGTGAATTGGCACATAGCGAATCTAGAAATTGAA
upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA11G04290.1 (Glycine max), 3'ss of exon 21
---tgatcctattctttgcctaaatttatttgtttatttattaatttatgcattttaaacttttgcaaatctctttagagcttttgaactgttatgtcc--acagGGAAGACGATAAATGGTGGCTTTTGTCAACCATCCTTCTGCTCTTCAAGTCAATACAAGCTCGTTTTGTTGATTGGCACATAGCAAATCTAGAAATCCAA
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ctgagattcatcccgtggttggtgtttatttatttattt-ttggttaacaacttttggtgttc----attattttcaagtcttaatacataacattctcttgcagGGAAGATGATAAATGCTGGCTTTTGCCTATCATCCTTTTTCTATTCAAGTCTGTACAGGCCCGTTTTGTCAATTGGCACATAGCGAATCTAGAAATGGAA
upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: AT5G47020.1 (Arabidopsis thaliana), 3'ss of exon 22
tgatcctattctttgcctaaatttatttgttt--atttattaatttatgcattttaaacttttgcaaatctctttagagcttttgaactgttatg--tccacagGGAAGACGATAAATGGTGGCTTTTGTCAACCATCCTTCTGCTCTTCAAGTCAATACAAGCTCGTTTTGTTGATTGGCACATAGCAAATCTAGAAATCCAA
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---tcttcgccgttagatgattatagaacatcaaacttctttattgattacccgtata-ttgagtacaaaaattgtgagtaaatgattggtaatggtttggcagGGATGATGATAAATGGTGGGTATTACCAACATTCCTCTTGTTACTCAAGTCAATACAAGCTCGGTTCCTTGATTGGCACGTCGCAAATCTAGAAGTACCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcattttaaacttttgcaaatctctttagagcttttgaactgttatgtccacagGGAAGACGATAAATGGTGGCTTTTGTCAACCATCCTTCTGCTCTTCAAGTCAATACAAGCTCGTTTTGTTGATTGGCACATAGCAAATCTAGAAATCCAA
tttaaactttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgatcctattctttgcctaaatttatttgtttatttattaatttatgcattttaaacttttgcaaatctctttagagcttttgaactgttatgtccacagGGAAGACGATAAATGGTGGCTTTTGTCAACCATCCTTCTGCTCTTCAAGTCAATACAAGCTCGTTTTGTTGATTGGCACATAGCAAATCTAGAAATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - -tgcctaa
- - - - - - - - - - - - - - - - - - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca