Sequence
atgc intronic sequence ATGC exonic sequence...tatatgatgaagacaaatgatagagttctgaatgttagatataatctgtcatttctgctcatgcatgtgttcatgtgttttgattcaacttctattatagGCTGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GRMZM2G376731_T01 (Zea mays), 3'ss of exon 20
tatatgatgaagacaaatgatagagttctgaatgttagatataatctgtcat-ttctgctcatgcatgtgttcatgtgttttgattcaacttctatt-atagGCTGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAA
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-gaagggcgattactctgaagagcgcttttcct-ttgtttattatacttcaaattttagtgccaaatatgtagaagtttgataagtcatcttttctttgtagGTTGCACAGAGCAGTTTGAGAGATCTGCTTTTGCAATGCTGCATGGATGAAGCAGCTGATGTTCGACAAAGTGCCCTTGCCCTTCTTGGAGACCTTTCTA
upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 20
tatatgatgaagacaaatgatagagttctgaatgttagatata-atctgtcatttctgctcatgcatgtgttcatgtg-----ttttgattcaacttctattatagGCTGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAA
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------cttccctttgttatttgagatcttgatatctgcttgagattaattaaaccagaaattgtatgatttcttgtgattgatcttgatatacactatttggtagGTTGCACAATGTTCTTTGAGGGACCTACTTCTGCATTGTTGTGTGGATGATGCTCCTGATGTTAGACAAAGTGCCTTTGCCTTACTTGGAGACCTTGCGC
upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 20
tatatgatgaagacaaatgatagagttctgaatgttagatataatctgtcatttctgctcatgcatgtgttcatg----tgttttgattcaacttctattatagGCTGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAA
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-actttcctttgttatttgacatattgttatctgattgagatta---attaaaccagaaattgtatgatttcttgagattatcttgatctacactatttggcagGTTGCACAATGTTCTTTGAGGGACCTACTTCTGCATTGTTGTGTGGATGATGCTCCTGATGTAAGACAAAGTGCCTTTGCCTTACTTGGAGACCTTGCGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtcatttctgctcatgcatgtgttcatgtgttttgattcaacttctattatagGCTGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAA
ttttgat putative branch site (score: 4)
cttctatt putative PPT
ttctattata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatatgatgaagacaaatgatagagttctgaatgttagatataatctgtcatttctgctcatgcatgtgttcatgtgttttgattcaacttctattatagGCTGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAA
- - - - -aagacaa
- - - - - - - - - - - - - -ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt