Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaaactgaaaggggaaagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtgttggactcatgaactgtgatttgtatcagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA04G41540.1 (Glycine max), 3'ss of exon 20
-----------------------gtaaaaaactgaaaggggaaagctataggccatgatagtgt---ttaaatctatttgccactaagtagcttgtgttgga------ctcatgaactgtgatttgtat--------cagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGAT
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gtgtgacgtagtgccggagtcctatatattatcgttgtttgtatttt-tagttcaatttcgcttggaatggatgtatattagaaaaaggaatttttgttgagagatgcttcaaaggatgttttttttactttcaatgcagGGATCTCCCAGTACCTGGGCGGGAGCTGTCAGGAGTTCATTTTGCTATGGAGTTTCTTCATGCAAACACTAAAAGCTTGCTTGATAGCAATCTCCAGGAT
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA19G16450.1 (Glycine max), 3'ss of exon 16
gtaaaaaactgaaagggga--aagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtgttggactcatgaactgtgatttgtatcagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGAT
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gtgagacagtgacatgagtcctatttattacctatgatttagttcaa-tttctgtgtcagaacgatggtgtactgagaaatacatataacttttcatga-agGGATCTTCCTGTACCTGGTCGGGAGCTTTCAGGAGTTCATTTTGCAATGGAGTTTCTCCATGCAAACACTAAAAGCTTGCTTGATAGCAATCTCGAGGAT
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA06G13280.2 (Glycine max), 3'ss of exon 20
------------------------------------------gtaaaaaactgaaaggggaaagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtgttggactcatgaactgtgatttgtat-cagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGAT
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gtgagacatagtgccggagtcctatatattattattgtttgtatatttagttcaatttcgcttggaatggatgtatattagaaaaaaaggaattgttaagagagatgcttcaaaggaagtttt---ttttactttcaatgcagGGATCTTCCAGTACCTGGGCGGGAGCTGTCAGGAGTTCATTTTGCTATGGAGTTTCTTCATGCAAATACTAAAAGCTTGCTTGATAGCAATCTCCAGGAT
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA14G32500.1 (Glycine max), 3'ss of exon 21
gtaaaaaactgaaaggggaaagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtg-ttggactcatgaac-tgtgatttgtatcagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGAT
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gtgaggcggtgacatgaatcctatttatgcc----tattgatttagttcaatttctttgagacagaacgaaattgtactgagaaatatatcttttcatgaagGGATCTTCCTGTACCTGGTCGGGAGCTGTCAGGAGTTCATTTTGCCATGGAGTTTCTCCATGCAAACACTAAAAGCTTGCTTGATAGCAATCTCCAGGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707509|gb|FC057735.1|FC057735EST: CGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAG GGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAA
genomic: CGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAGgtaaaaaact ... tttgtatcagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctatttgccactaagtagcttgtgttggactcatgaactgtgatttgtatcagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGAT
atttgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaaactgaaaggggaaagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtgttggactcatgaactgtgatttgtatcagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT