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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatgggttccttgtgttgacatgggtggtcatgtgtgtctgctttttatttctatatatatttgtaatgctttttctttgttaaattttcagGTACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACAGATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAA

Basic information

species Vitis vinifera
transcript Vv16s0050g00490.t01
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 20
-------------gtgaaatgggttccttgtgttg-acatgggtggtcatgtg-tgtctgctttttatttctatatatatttg--taatgctttt--tctttgttaaattttcagGTACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACAGATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAA
              |  | |   ||| || ||| | |      |   | |||| ||| ||   | |    |||   |  |||   | || || ||  | | ||||||| || ||| || |  | |||||||| || || || |||||| ||||  | ||| |||  |||||||| ||||| ||||| || |||||||| ||||||||||| ||||
gttatcttgtaaaatttagtaacttctttttgtggtattcctttatgcttgtgatgtgtgaggtgtgacactaatgaggtttaacttattctcttaatttatgttaaacttgcagATAAGGGTCCCATATCGACCAATAGATGCTAAGATTAGTTCACTTTCAAGTGATCGTGACAAACTCCCCTCTGGAAAACAGATACTAGCATTGACGTTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110356805|gb|EC919900.1|EC919900
EST:     AAGCTATACTATCATCTGAGAAACTTGCCCCTGCTGCTGTTTTAAACAAG                         GTACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACA
genomic: AAGCTCTACTATCATCTGAGAAACTTGCCCCTGCTGCTGTTTTAAACAAGgtgaaatggg ... aaattttcagGTACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACA
EST: gi|110358933|gb|EC919587.1|EC919587
EST:     AAGCTATACTATCATCTGAGAAACTTGCCCCTGCTGCTGTTTTAAACAAG                         GTACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACA
genomic: AAGCTCTACTATCATCTGAGAAACTTGCCCCTGCTGCTGTTTTAAACAAGgtgaaatggg ... aaattttcagGTACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgctttttatttctatatatatttgtaatgctttttctttgttaaattttcagGTACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACAGATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAA
                                ctttttctttgtta  CT-rich tract
     tttttatttctatata  TA-rich tract