Sequence
atgc intronic sequence ATGC exonic sequence...agatttttgataaattttggagtattgaggcaagcatgactgttaatttctttttttttttgacctttatttgatttgatttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GRMZM2G475867_T01 (Zea mays), 3'ss of exon 19
-----------------------------------------------------------agatttttgataaattttggagtattgaggcaagcatga---ctgttaatttctttttttttttgacctttatttgat---------ttgatttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
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gttctggtcaatatatcacaaagtttatgatttattatgcttatcattattaatttattatattctcatgcccctttggtccatccatatgaataaaatatttttggttttcatctgcttcttgaaacttacttatcatgtacatgttggtattctgatttctgatgacagCTCCAAATGGATACACTGCAAAGCCGACTTGATGCAGAGTTCCTTCTAGCTCATATGTGTTCAGTCAAGTTTAAGGAATGGATCGTGGTGCTAGCTACTT
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GRMZM2G052750_T02 (Zea mays), 3'ss of exon 19
--------------------------------------------------------------------agatttttgataaat-tttggagtattgaggcaagcatgactgttaatttctttttttttttgacctttatttg--atttgatttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
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gttctggtcaatatatcacaaagttttatggtttattctgcttatcggtgtaaatttattacatctggttgtttctcatgcccctttgttctgtccatacgaatgaagtagttttggttttaatctccttgaaacttatttatcatgtacattttggtattctgatgacagCTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCTCATATGTGTTCAGTCAAGTTTAAGGAATGGATCGTGGTGCTAGCTACTT
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 20
agatttttgataaattttggagtattgaggcaagcatg-actgttaatttcttt--ttttttttgacctttatttgatttgatttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
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---atactactatattggcaggagcttgtctagatttatgctgatattttctttaggtttgtttcattttgctccattattgaatgctattttttgttatcagCTTCAAATGGGAACATTACAGAGCCGTTTGGATGCTGACTTTCTCCTATCTCATATGTGCTCTGTTAAGTTTAAGGAATGGATAGTTGTCCTGGCTACTC
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 20
agatttttgataaattttggagtattgaggcaagcatgactgttaatttctttttttttttgacctttatttgatt-tgatttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
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-gctataatgtaaagtcttaaatcatttggcaggagcttgtctacatttgtgctgatattttctttttgctcctttattgaacactattttttgttatcagCTTCAAATGGGAACATTACAGAGCCGTTTGGATGCTGACTTTCTCCTATCTCATATGTGCTCTGTCAAGTTTAAGGAATGGATAGTTGTCCTGGCTACTC
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 20
-------------------------------------------------------------------------agatttttgataaattttggagtattgaggcaagcatgactgttaatttctttttttttttg-acctttatttgattt----gatttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
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gttagaatcaacccccttgtggtttctttgatgttcaaaactcgttatttttctctctcattctgctgcttgaaacaatttgataa---ctaaaacatagatccctgtcacatcgtaaaagtctgcatatttgagtaaatttatcttatatcgaagtctaactattgaaatccctcagCTGCAAATGAGTGAGCTACAGAACCGGTTAGATGCAGAGTTTCTATTGGCTCAAATGTGCTCTGTCAAATTCAAAGAATGGATAGTTGTTCTTGCCACTC
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 20
-------------------------------------------------------------------------agatttttgataaattttggagtattgaggcaagcatgactgttaatttcttttttttt---ttgacctttatttgatttga--tttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
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gttagaatcaacccccttgtggtttctttgatgttcaaaactcgttatttttccctctcattctgctgcttgaaacaatttgataa---ctaaaacatagatccctatcgcatcgtaaaagtctgcatatttgagtaaacttatcttacatcgaagtctaactattgaaatccctcagCTGCAAATGAGTGAGCTACAGAACCGGTTAGATGCAGAGTTTCTATTGGCTCAGATGTGCTCCGTCAAATTCAAAGAATGGATAGTTGTTCTTGCCACTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71888161|gb|DT037216.1|DT037216EST: TTGCTCGCTTGGAGAGCTTTGCTTCAGGGCTTGAACTAATCGGGGAAAAG CTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCT
genomic: TTGCTCGCTTGGAGAGCTTTGCTTCAGGGCTTGAACTAATCGGGGAAAAGgtaaccgtca ... atattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCT
EST:
gi|110377156|gb|EC942215.1|EC942215EST: TTGCTCGCTTGGAGAGCTTTGCTTCAGGGCTTGAACTAATCGGGGAAAAG CTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCT
genomic: TTGCTCGCTTGGAGAGCTTTGCTTCAGGGCTTGAACTAATCGGGGAAAAGgtaaccgtca ... atattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCT
EST:
gi|111283809|gb|EE296910.1|EE296910EST: TTGCTCGCTTGGAGAGCTTTGCTTCAGGGCTTGAACTAATCGGGGAAAAG CTTGAAATGGGTA
genomic: TTGCTCGCTTGGAGAGCTTTGCTTCAGGGCTTGAACTAATCGGGGAAAAGgtaaccgtca ... atattttcagCTTGAAATGGGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttctttttttttttgacctttatttgatttgatttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
tattttc CT-rich tract
tttttttttttgacct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agatttttgataaattttggagtattgaggcaagcatgactgttaatttctttttttttttgacctttatttgatttgatttattgtttcatattttcagCTTGAAATGGGTACGCTGCAGAGCCGGCTGGATGCAGAGTTCCTTTTGGCTCATATGTGCTCTGTTAAGTTTAAAGAGTGGATAGTTGTCCTGGCTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - -gcatgac