Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaattttagatgaatatgaagacatatatttcattttatagcatctgtatgattggttttttcgtaaattatccagATACGATATGGAGGATGCTATGATTTTGAATAAGTCATCTGTGGATAGAGGGTTGTGTCATGGACAAATATACCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 3'ss of exon 19
gtaaaaattttag-atga-atatgaaga-catatatttcattttatagcatctgtatgattggttttttcgtaa-attatccagATACGATATGGAGGATGCTATGATTTTGAATAAGTCATCTGTGGATAGAGGGTTGTGTCATGGACAAATATACCAG
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gtgagcatttcattatgttgtgtaatgatcatttgtttgaactt-taacatg-ataaaatcatagaactggtattgcaatctagGTATGATATGGAGGATGCCATGATTTTGAATAAATCCGCTGTTGATCGTGGGATGTTCCGTGGGCATATTTTCCAG
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 24
gtaaaaattttagatgaatatgaagacatatatt-tcattttatagcatctgtatgattggttttttcgtaaattatccagATACGATATGGAGGATGCTATGATTTTGAATAAGTCATCTGTGGATAGAGGGTTGTGTCATGGACAAATATACCAG
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gtaactgctttaatgcaaagcaactatagttttaaccatcctgtgctatttaca--aatatcttgtgctaactgtttacagATATGATATGGAGGATGCTATGATTCTAAATAAGTCATCAGTGGAGCGTGGAATGTTTCATGGACAAATATATCAG
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA17G23500.1 (Glycine max), 3'ss of exon 15
gtaaaaattttagatgaatatgaagacatatatttcattttatagcatctgtatgattggttttttcgtaaatta--tccagATACGATATGGAGGATGCTATGATTTTGAATAAGTCATCTGTGGATAGAGGGTTGTGTCATGGACAAATATACCAG
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gtaactgcttta-atacaaa-gcaactgtaattttaaccttcctgtg-ctgtttacaaatatcttgtgttatctaattacagATATGATATGGAGGATGCCATGATTCTAAATAAGTCATCAGTGGAACGTGGAATGTTTCATGGACAAATATATCAG
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: PP1S169_131V6.2 (Physcomitrella patens), 3'ss of exon 21
------------------------------------------------gtaaaa-attttagatgaatatgaagacatatatttcattttatagcatctgtatgattggttttttcgtaa--attatccagATACGATATGGAGGATGCTATGATTTTGAATAAGTCATCTGTGGATAGAGGGTTGTGTCATGGACAAATATACCAG
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gtaagtaaacatcttcaagaggctgctagcttcagtgtcttgatgtccataaaatgttgcagttgattgtttttctatttttctattatgtctttgttgacaatattgtcaaatctggaatggtttctcagATTCGATATGGAGGATGCTATGATATTGAACAAATCATCAGTGGAGCGTGGCTTACACTATGGTCAAGTCTACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatatatttcattttatagcatctgtatgattggttttttcgtaaattatccagATACGATATGGAGGATGCTATGATTTTGAATAAGTCATCTGTGGATAGAGGGTTGTGTCATGGACAAATATACCAG
ttttttcgtaaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaattttagatgaatatgaagacatatatttcattttatagcatctgtatgattggttttttcgtaaattatccagATACGATATGGAGGATGCTATGATTTTGAATAAGTCATCTGTGGATAGAGGGTTGTGTCATGGACAAATATACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA