Sequence
atgc intronic sequence ATGC exonic sequencegtaggtcattatcctatcgagcttatatatttttttatgattatgagtatgattacaaacatgggatttttctcaatcattcctttttttttttttttggtaataattttatattcaattcgttagGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCACACCAAGGAAAGAATCAGTTTGTAACAGAGATTGCAACCATATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0055g00580.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: LOC_Os08g10320.3 (Oryza sativa), 3'ss of exon 19
gtaggtcattatcct---atcgagcttatatattt----ttttatgattatgagtatgattacaaacatgggatttttctcaa-tcattccttttttttt----ttttttggtaat---aattttatattcaattcgttagGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCACACCAAGGAAAGAATCAGTTTGTAACAGAGATTGCAACCATATCAG
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gttgtctattttccctaatttaatactgtgaaattgcaattgaataattatctgatctgtattaaatatagatttcttgcaaacttgttggtctaccctcaaaatataaatgtaacgtaagtaaagttcttcctttggcagGGTATGCTACCTGATGGAAGAGTTATAGCTGTAAAACAACTTTCTCAATCATCCCATCAGGGGAAAAACCAGTTTGTGACAGAGGTTGCAACAATTTCTT
upper sequence: Vv12s0055g00580.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA09G15200.1 (Glycine max), 3'ss of exon 19
gtaggtcattatcctatcgagcttatatatttttttatgattatgagtatgattacaaacatgggatttttctcaatcattcctttttttttttttttggtaataattttatattcaattcgtt--agGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCACACCAAGGAAAGAATCAGTTTGTAACAGAGATTGCAACCATATCAG
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------------------------ttcgagtcaattataatactttctttaacctaaaactaagaaatat----atatgttgctcatatagtaccaagagtaacactttttccctttttctcttacagGGAACACTTGATGATGGAAGAGTTATCGCTGTGAAACAACTATCTGTACAATCCAATCAAGGAAAGAATCAGTTCATAGCTGAGATTGCCACTATCTCCG
upper sequence: Vv12s0055g00580.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA08G25600.1 (Glycine max), 3'ss of exon 19
gtaggtcattatcctatcgagcttatatatttttttatgattatgagtatgattacaaacatgggatttttctcaatcattcctttttttttttttttggtaataattttatattcaattcgttagGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCACACCAAGGAAAGAATCAGTTTGTAACAGAGATTGCAACCATATCAG
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--------------gatgaatcaaatcctttttctaatactcaatattttgag-actaatattggaa----ctaaatc-------ctttatttaagagaatattatttttcttttctttcttctagGGGACACTTAATGATGGAAGAGTCATTGCTGTGAAACAACTATCTGTGGGATCCCATCAAGGAAAGAGCCAATTCATAACTGAGATTGCTACTATATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22011274|gb|BQ796308.1|BQ796308EST: TCAGTCCTTCTAATAAGCTTGGAGAGGGTGGATTTGGACCTGTCTATAAG GGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCA
genomic: TCAGTCCTTCTAATAAGCTTGGAGAGGGTGGATTTGGACCTGTCTATAAGgtaggtcatt ... aattcgttagGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcaatcattcctttttttttttttttggtaataattttatattcaattcgttagGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCACACCAAGGAAAGAATCAGTTTGTAACAGAGATTGCAACCATATCAG
tttttttttttttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggtcattatcctatcgagcttatatatttttttatgattatgagtatgattacaaacatgggatttttctcaatcattcctttttttttttttttggtaataattttatattcaattcgttagGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCACACCAAGGAAAGAATCAGTTTGTAACAGAGATTGCAACCATATCAG
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