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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattcaaccataggttatctaattgcattataagattgaaaaataatatacagccatcctaatgtttctcatgaaaacttaaatttgttgttgaaaccttttctaacaagtggcatatgtttcagGAGAAACAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAAGGACCTCTATTTCCGTACTCAATTCTCCCAGCCCTTCTTCACCCAATTT

Basic information

species Vitis vinifera
transcript Vv09s0002g05600.t01
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110686591|gb|EE064407.1|EE064407
EST:     ACTTTGGGGGTGGATTTCACTGAAATATACAAGAATTCGGACCTATACAG                         GAGAATCAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAA
genomic: ACTTTGGGGGTCGATTTCACTGAAATATACAAGAATTCGGACCTATACAGgtgattcaac ... tatgtttcagGAGAAACAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAA
EST: gi|161713935|gb|FC062595.1|FC062595
EST:     ACTTTGGGGGTCGATTTCACTGAAATATACAAGAATTCGGACCTATACAG                         GAGAAACAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAA
genomic: ACTTTGGGGGTCGATTTCACTGAAATATACAAGAATTCGGACCTATACAGgtgattcaac ... tatgtttcagGAGAAACAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAA
EST: gi|110425792|gb|EC992184.1|EC992184
EST:     ACTTTGGGGGTCGATTTCACTGAAATATACAAGAATTCGGACCTATACAG                         GAGAAACAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAA
genomic: ACTTTGGGGGTCGATTTCACTGAAATATACAAGAATTCGGACCTATACAGgtgattcaac ... tatgtttcagGAGAAACAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAA
EST: gi|33406125|gb|CF211752.1|CF211752
EST:     CGGACCTATACAG                         GAGAAA-AAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAA
genomic: CGGACCTATACAGgtgattcaac ... tatgtttcagGAGAAACAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaaacttaaatttgttgttgaaaccttttctaacaagtggcatatgtttcagGAGAAACAAAGATTTAATTAAAGAACTGAGCCAACCTCCCCCTGGTACAAAGGACCTCTATTTCCGTACTCAATTCTCCCAGCCCTTCTTCACCCAATTT
                              ttctaac  putative branch site (score: 1)
     aacttaaatttgtt  TA-rich tract