1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gttagtaagagcgttatctgttcggtgttcacttggtgaataggataattataatttgaattggaactaccttttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCCGACAATATTCCAAGACAATGCCCAACTCACTAGTACTGCAGACA
species | Vitis vinifera |
transcript | Vv07s0031g02190.t01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|351013790|gb|FQ433942.1|FQ433942
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|351054754|gb|FQ462784.1|FQ462784
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|351048032|gb|FQ441204.1|FQ441204
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|351055546|gb|FQ442342.1|FQ442342
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|351025060|gb|FQ433477.1|FQ433477
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|351036566|gb|FQ457279.1|FQ457279
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|351033178|gb|FQ461950.1|FQ461950
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAANGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|351054627|gb|FQ456824.1|FQ456824
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|349830463|gb|FQ416761.1|FQ416761
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCEST: gi|349810328|gb|FQ401774.1|FQ401774
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
EST: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAANGAGATATGCAG ATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
genomic: TGCAGCACCTCTCTATACTCATTTCACCTCTCCTATAAGGAGATATGCAGgttagtaaga ... ttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTC
tcacttggtgaataggataattataatttgaattggaactaccttttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCCGACAATATTCCAAGACAATGCCCAACTCACTAGTACTGCAGACA
ctaccttttttttgc CT-rich tract
aataggataattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtaagagcgttatctgttcggtgttcacttggtgaataggataattataatttgaattggaactaccttttttttgcagATGTCATTGTACACAGGCTACTTGCTGCATCTTTAGGGTTATACAAACTTCCGACAATATTCCAAGACAATGCCCAACTCACTAGTACTGCAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG