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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttccctctccctcccccttcctccccccatctctctcccacttatagatattttggaaaacttttactgatgctgtggcttcctgcagGATAACCTGAAACCATTGCTGAAATATTTATATGATTCCTTCTGGGATCAGTTGGTCAAATTTCAGGATTTGGCTTGCATTAAGACTCTAAAAGTTAAAT

Basic information

species Vitis vinifera
transcript Vv05s0077g01200.t01
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351017758|gb|FQ436111.1|FQ436111
EST:     ATAATCTGCTGAATTCTGCAGTTCTAGAACTTTTTGAGTATATCCGCAGG                         GATAACCTGAAACCATTGCTGAAATATTTATATGATTCCTTCTGGGATCAG
genomic: ATAATCTGCTGAATTCTGCAGTTCTAGAACTTTTTGAGTATATCCGCAGGgtgcgttccc ... cttcctgcagGATAACCTGAAACCATTGCTGAAATATTTATATGATTCCTTCTGGGATCAG
EST: gi|351022501|gb|FQ447023.1|FQ447023
EST:     ATAATCTGCTGAATTCTGCAGTTCTAGAACTTTTTGAGTATATCCGCAGG                         GATAACCTGAAACCATTGCTGAAATATTTATATGATTCCTTCTGGGATCAG
genomic: ATAATCTGCTGAATTCTGCAGTTCTAGAACTTTTTGAGTATATCCGCAGGgtgcgttccc ... cttcctgcagGATAACCTGAAACCATTGCTGAAATATTTATATGATTCCTTCTGGGATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcccacttatagatattttggaaaacttttactgatgctgtggcttcctgcagGATAACCTGAAACCATTGCTGAAATATTTATATGATTCCTTCTGGGATCAGTTGGTCAAATTTCAGGATTTGGCTTGCATTAAGACTCTAAAAGTTAAAT
                               tactgat  putative branch site (score: 2)
                                             cttcctgc  putative PPT
      acttatagatatttt  TA-rich tract