Sequence
atgc intronic sequence ATGC exonic sequencegtgagtagaccatctactgtagggtaggatctgttttggtttcttttctaatctttgacttttggtgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA07G38050.1 (Glycine max), 3'ss of exon 20
-------------------gtgagtagaccatctactgtagggtaggatctgttttggtttcttttctaatctttgacttttggtgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
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gtgagcaattttttttataatttataaacaagg-gttatacacttctatttattt-attattttttaaaaattctggtatttggtaaac-atagGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 20
gtgagtagacc-----atctactgtagggtaggatc---tgttttggtttcttttctaatctttgacttttggtg------aattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
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gtgagcaaatttctttataatttataaacaagggttatacacttctatttatttattattttttaaattctggaatttggtaaacatagGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA15G10370.1 (Glycine max), 3'ss of exon 20
gtgagtaga-----ccatctactgtagggtaggatctgttttggtttcttttctaatctttgacttttggtgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
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gtaaacatttttcccctttttttgcaaactaggctttcacatggaccctttttta-tttttattatttggttaat-atagGGATTTTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCCGAAATGATATACAAAGTATTGCTTCTGAGATGGAAG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: GLYMA13G28720.1 (Glycine max), 3'ss of exon 20
gtgagtag---accatctactgtagggtaggatct-gttttggtttcttttctaatctttgacttttggtgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
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gtgaacaatttccccctttttgcaaactaggctttcacatggaccctttttttaatttttattatttggttaat-atagGGATTTTCTTCATGGACCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: AT5G18620.2 (Arabidopsis thaliana), 3'ss of exon 20
gtgagt-agaccatc------tactgtagggtaggatctgttttggtt---tcttttctaatctttgacttttggtgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
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gcaagccaaaccattcgaccttactgtgggttgacatttgtttttgatggtttttttataatttaatggagttgatattttttagGGTTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCATTAGGGCTTGTGAGAAGTATGGCCGGAACGACATAAAGAGTATTGCCTCTGAGATGGAAG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 20
lower sequence: AT3G06400.3 (Arabidopsis thaliana), 3'ss of exon 20
----gtgagtagaccatctactgtaggg----tagg-atctgttttggtttctttt--ctaatctttgacttttggtgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
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gcaagtgaatatgtttgatgttagagtggtcttagacatttgatttggtaggctttaattaattttttgtaattgtcaatctccagGGTTTCTCAACATGGAGCAGAAGAGATTTTAATACTTTCCTCAGGGCTTGTGAGAAGTATGGCCGCAACGACATAAAAAGCATTGCCTCTGAGATGGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28967912|gb|CB346945.1|CB346945EST: ATCCCTTGACTGCCGAGGAGCAGGAAGAAAAGGAGAGATTATTAGAAGAG GGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGT
genomic: ATCCCTTGACTGCCGAGGAGCAGGAAGAAAAGGAGAGATTATTAGAAGAGgtgagtagac ... tgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agggtaggatctgttttggtttcttttctaatctttgacttttggtgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
ttttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtagaccatctactgtagggtaggatctgttttggtttcttttctaatctttgacttttggtgaattgtagGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG