1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaatttcttatttaattacaggcatggtttttaaattatgggtttttttttttccctagaatatgataaatgctcattaatgttccattaacctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTGGCAATTAATGAG
species | Vitis vinifera |
transcript | Vv19s0135g00100.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTG GTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTEST: gi|51990043|gb|CV179498.1|CV179498
genomic: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTGgtaagcaatc ... acctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTT
EST: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTG GTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTEST: gi|294966449|gb|GW839556.1|GW839556
genomic: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTGgtaagcaatc ... acctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTT
EST: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTG GTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTEST: gi|71875043|gb|DT024098.1|DT024098
genomic: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTGgtaagcaatc ... acctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTT
EST: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTG GTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTEST: gi|71869765|gb|DT018820.1|DT018820
genomic: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTGgtaagcaatc ... acctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTT
EST: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTG GTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTEST: gi|71875150|gb|DT024205.1|DT024205
genomic: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTGgtaagcaatc ... acctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTT
EST: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTG GTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTEST: gi|87585836|gb|DY474390.1|DY474390
genomic: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTGgtaagcaatc ... acctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTT
EST: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTG GTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTT
genomic: AGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTGgtaagcaatc ... acctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTT
ttttttttccctagaatatgataaatgctcattaatgttccattaacctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTGGCAATTAATGAG
cattaac putative branch site (score: 2)
tagaatatgataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttcttatttaattacaggcatggtttttaaattatgggtttttttttttccctagaatatgataaatgctcattaatgttccattaacctgggcagGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTGGCAATTAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - -acaggca
- - - - - - - - - - - - - - - - - -ttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccatt