1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...agttaatttttaacttctgtttaatggttttcttttgtttattctgggtttcttttgctgagtggattgtgacttgttttttttcctcctcttctcaaagGTGTGGGCAATTGCAGATACCAAACGACAGGGTTTTCTTGGTTTAAAAGAGTTCATTACTGCCATGCAG
species | Vitis vinifera |
transcript | Vv19s0090g01130.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCACAAAGTTCTTCGCTATGTCCAATTTGCCTCGCCCGGATCTCAAACAG GTGTGGGCAATTGCAGATACCAAACGACAGGGTTTTCTTGGTTTAAAAGAGEST: gi|161706682|gb|FC056343.1|FC056343
genomic: CCATAAAGTTCTTCGCTATGTCCAATTTGCCTCGCCCGGATCTCAAACAGgttctctctt ... cttctcaaagGTGTGGGCAATTGCAGATACCAAACGACAGGGTTTTCTTGGTTTAAAAGAG
EST: CCACAAAGTTCTTCGCTATGTCCAATTTGCCTCGCCCGGATCTCAAACAG ATGTGGGCAATTGCAGATACCAAACGACAGGGTTTTCTTGGTTTAAAAGAG
genomic: CCATAAAGTTCTTCGCTATGTCCAATTTGCCTCGCCCGGATCTCAAACAGgttctctctt ... cttctcaaagGTGTGGGCAATTGCAGATACCAAACGACAGGGTTTTCTTGGTTTAAAAGAG
gggtttcttttgctgagtggattgtgacttgttttttttcctcctcttctcaaagGTGTGGGCAATTGCAGATACCAAACGACAGGGTTTTCTTGGTTTAAAAGAGTTCATTACTGCCATGCAG
ttgtgacttgtttttt CT-rich tract
ttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttaatttttaacttctgtttaatggttttcttttgtttattctgggtttcttttgctgagtggattgtgacttgttttttttcctcctcttctcaaagGTGTGGGCAATTGCAGATACCAAACGACAGGGTTTTCTTGGTTTAAAAGAGTTCATTACTGCCATGCAG
- - - - - - -cttctgt
- - - - - - - - - - - - - - - - - - - - attctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggattg