Sequence
atgc intronic sequence ATGC exonic sequence...tacttctatttgaactagcttcacttttttcatgttattattcttactattaaatcacatcttttagtatagaagttcatttttctattaatgtttacagGATGGCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G10460.1 (Glycine max), 3'ss of exon 3
tacttctatttgaactagcttcacttt---tttcatgttattattcttactattaaatcacatcttttagtatagaagttcat-ttttctattaatgtttacagGATGGCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGA
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--ttgatctttgaa-tggttgcactctgaattttagtgagtcaaatgttttattttgtttattgtttcagtatcaagtttcaagtgatatcatactttttgcaGAATGGATGAAGCACTATGTTCATATATTGACAAGGATCGTCCATTTTTGGGCATTTGTCTTGGACTTCAACTACTTTTTGAATCTAGTGAGGAGAATGG-
upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G12920.1 (Glycine max), 3'ss of exon 3
tacttctatttgaactagcttcacttttttcatgttattattct----tactattaaatcacatcttttagtatagaagttcatttt-tctattaatgtttacagGATGGCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGA
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-----ttgaatggtcgcactctgaattttagctttagtgattcaaatgttttattttgtttattgtttcagtattaagtttcaagtaatatcatactttttgcagAATGGATGAAGCACTATGTTCATATATTGACAAGGATCGTCCATTTCTGGGCATTTGTCTTGGACTTCAACTACTTTTTGAATCTAGTGAGGAGAATGGA
upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 3'ss of exon 3
tacttctatttgaactagcttcacttttttcatgttattattcttactattaaatcacatcttttagtatagaagttcatttttctattaatgtttacagGATGGCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGA
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-----gtactt--actaatcac-ctctgctgattttctcatttagaataatgtcttacttagttcttaatatacgatttttggttctttgattgttgcagGATGGCTGAAGCTTTGTGCAAATATATTGAGAATGACCGTCCATTTCTAGGCATATGTCTTGGTCTACAACTACTTTTCGATTCTAGTGAAGAGAATGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actattaaatcacatcttttagtatagaagttcatttttctattaatgtttacagGATGGCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGA
tattaat putative branch site (score: 2)
ttcatttttctattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacttctatttgaactagcttcacttttttcatgttattattcttactattaaatcacatcttttagtatagaagttcatttttctattaatgtttacagGATGGCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - -aaatcac