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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcagtgtccaagttcctgggacattttatggggatatcactgataatgacataataggcaaatatatgatattttaggtataatgatgctttgttgttacttatttaatttttgtgctcttgcttttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACA

Basic information

species Vitis vinifera
transcript Vv19s0090g00560.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724992|gb|EE101306.1|EE101306
EST:     CTGAGGATGAAGAACTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACT                         AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
genomic: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatca ... ttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
EST: gi|110688432|gb|EE066976.1|EE066976
EST:     CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACT                         AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
genomic: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatca ... ttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
EST: gi|161715741|gb|FC066145.1|FC066145
EST:     CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACT                         AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
genomic: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatca ... ttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
EST: gi|37184436|gb|CF603790.1|CF603790
EST:     CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACT                         AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
genomic: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatca ... ttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgatgctttgttgttacttatttaatttttgtgctcttgcttttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACA
                                           ttttgat  putative branch site (score: 4)
                                    ctcttgctttt  CT-rich tract
         tttgttgttacttatt  TA-rich tract