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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttgatctcgccctgaattgatttgtattttctagagtctgatatgtgttgggctgattgtgatggtgatggggattcttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATGTACACATTCGTATACAGCAGAGGAATGGAAAGAAGAGCCTGACTACTGT

Basic information

species Vitis vinifera
transcript Vv19s0090g00420.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399610|gb|EC966124.1|EC966124
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110381416|gb|EC934391.1|EC934391
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110413107|gb|EC978880.1|EC978880
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110394027|gb|EC958394.1|EC958394
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110399308|gb|EC965807.1|EC965807
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|34548008|gb|CF516240.1|CF516240
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110732012|gb|EE106936.1|EE106936
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|26262514|gb|CA813577.1|CA813577
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|32268526|gb|CD717685.1|CD717685
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110390266|gb|EC955168.1|EC955168
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|30125889|gb|CB911228.1|CB911228
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|32270786|gb|CD719945.1|CD719945
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110714445|gb|EE091358.1|EE091358
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|33408556|gb|CF214183.1|CF214183
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110394877|gb|EC960261.1|EC960261
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|34549846|gb|CF518078.1|CF518078
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|29783601|gb|CB349899.2|CB349899
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|352782608|gb|FQ476688.1|FQ476688
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110714735|gb|EE091984.1|EE091984
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110376519|gb|EC941583.1|EC941583
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|26262469|gb|CA813532.1|CA813532
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110394740|gb|EC960022.1|EC960022
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|351016410|gb|FQ423837.1|FQ423837
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110409750|gb|EC975420.1|EC975420
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110400162|gb|EC966709.1|EC966709
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110383355|gb|EC947723.1|EC947723
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|33408126|gb|CF213753.1|CF213753
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|32247477|gb|CD713296.1|CD713296
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|30326158|gb|CD009420.1|CD009420
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|34546868|gb|CF515100.1|CF515100
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110408810|gb|EC974453.1|EC974453
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110391267|gb|EC956231.1|EC956231
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110404591|gb|EC969891.1|EC969891
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|34546689|gb|CF514921.1|CF514921
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110362224|gb|EC925742.1|EC925742
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110703159|gb|EE079771.1|EE079771
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|28971176|gb|CB350209.1|CB350209
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGAAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110411871|gb|EC977598.1|EC977598
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|30322834|gb|CD006096.1|CD006096
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|30251574|gb|CB969307.1|CB969307
EST:     GGTTG-ACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: GGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110399261|gb|EC965758.1|EC965758
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110373469|gb|EC937711.1|EC937711
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110418116|gb|EC984235.1|EC984235
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110427741|gb|EC994191.1|EC994191
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|110398077|gb|EC964179.1|EC964179
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG
EST: gi|34320204|gb|CF372958.1|CF372958
EST:     TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG                         ATCCATTTGCTGAGGCCAAGGACTCAGGGGCGCCTGGGGCAAAAGAGTATG
genomic: TCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGgtacgttgat ... ttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtctgatatgtgttgggctgattgtgatggtgatggggattcttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATGTACACATTCGTATACAGCAGAGGAATGGAAAGAAGAGCCTGACTACTGT
                  ggctgat  putative branch site (score: 4)
                                          ttctt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgttgatctcgccctgaattgatttgtattttctagagtctgatatgtgttgggctgattgtgatggtgatggggattcttgagtgcagATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATGTACACATTCGTATACAGCAGAGGAATGGAAAGAAGAGCCTGACTACTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG