Sequence
atgc intronic sequence ATGC exonic sequence...gcatgtgctcgatcaagctcactaggtagctaatccttactcatgttggtcctcatttattccttataatttttctcatcatcttgtcccgtttcagcagGAAGATGGCTGGGTGGTCTGCAGGGTATTTAAGAAGAAAAATCATAATAGAGGGTTTCAATCAGAAGCTGCTCAAGAAGAATACTTGACTCATATGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0085g01210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G42050.1 (Glycine max), 3'ss of exon 4
-gcatgtgctcgatcaagctcactaggtagctaatccttactcatgttggtcctcatttattccttataatttt-tctcatcatcttgtcccgtttcagcagGAAGATGGCTGGGTGGTCTGCAGGGTATTTAAGAAGAAAAATCATAATAGAGGGTTTCAATCAGAAGCTGCTCAAGAAGAATACTTGACT---CATATGAGAG
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catatcactttaatcacatatagtt--caaataacactcgtacggatccaacttaatttccagataatgacaaagtgttttcatgtgtttaatttcttgcagGAAGATGGGTGGGTGGTATGCAGGGTCTTCAAAAAGAAAAACCAAAGCCGAGGTTTCCAACAAGAACTTGAAGAAGAAGAGCACTTAACCACCCACATGA--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtcctcatttattccttataatttttctcatcatcttgtcccgtttcagcagGAAGATGGCTGGGTGGTCTGCAGGGTATTTAAGAAGAAAAATCATAATAGAGGGTTTCAATCAGAAGCTGCTCAAGAAGAATACTTGACTCATATGAGAG
tcttgtcccgtttc CT-rich tract
tcatttattccttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatgtgctcgatcaagctcactaggtagctaatccttactcatgttggtcctcatttattccttataatttttctcatcatcttgtcccgtttcagcagGAAGATGGCTGGGTGGTCTGCAGGGTATTTAAGAAGAAAAATCATAATAGAGGGTTTCAATCAGAAGCTGCTCAAGAAGAATACTTGACTCATATGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-catgtgc
- - - - - - - - -ctcacta
- - - - - - - - - - - - - - - - - - - -ctcatgt
- - - - - - - - - - - - - - - - - - - - - - - - -tcctcat