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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttgataatgaaccccattttatttgaagcaaaattgaaatccaagaagtaatttattttcctgtctttttctctcagGTTATGATGGGTGCCATTTCATCTATTTATGATGATTGAAGACAAGACCCTGTTTGGGAGGCACCACCCTTTCTCATTTTCCTTTCAAGTTACAAACAAA

Basic information

species Vitis vinifera
transcript Vv19s0085g00810.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37185369|gb|CF604722.1|CF604722
EST:     TGGCACATGCGATTTTGGAGGAACCGCCATGCTAGTCAGCGTTGATCCAA                         GTTATGATGGGTGCCATTTCATCTATTTATGATGATTGAAGACAAGACCCT
genomic: TGGCACATGCGATTTTGGAGGAACCGCCATGCTAGTCAGCGTTGATCCAAgtaggttttg ... tttctctcagGTTATGATGGGTGCCATTTCATCTATTTATGATGATTGAAGACAAGACCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagcaaaattgaaatccaagaagtaatttattttcctgtctttttctctcagGTTATGATGGGTGCCATTTCATCTATTTATGATGATTGAAGACAAGACCCTGTTTGGGAGGCACCACCCTTTCTCATTTTCCTTTCAAGTTACAAACAAA
                          taatttattttcctgt  CT-rich tract
                    aagaagtaatttattt  TA-rich tract