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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagtaatagatttttttgtttaatgtctatttatatgggagtgttgtggttggatggtgtaattgacttgtgatatgttctctgtctaaactatacagGAAATGCAGTGCCAGGAGTCTCCAGCCCATCAAAGCCACAGCCACAGAATTGCCTCCTACAGTTCAAA

Basic information

species Vitis vinifera
transcript Vv19s0085g00600.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863317|gb|DT012372.1|DT012372
EST:     CACCATATTTGGTACTCCTTGTATTGGAAATTCATCTTCCTTACA                         GAAATGCAGTGCCAGGAGTCTCCAGCCCATCAAAGCCACAGCCACAGAATT
genomic: CACCATATTTGGTACTCCTTGTATTGGAAATTCATCTTCCTTACAgttgagtaat ... aactatacagGAAATGCAGTGCCAGGAGTCTCCAGCCCATCAAAGCCACAGCCACAGAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtggttggatggtgtaattgacttgtgatatgttctctgtctaaactatacagGAAATGCAGTGCCAGGAGTCTCCAGCCCATCAAAGCCACAGCCACAGAATTGCCTCCTACAGTTCAAA
                                        gtctaaa  putative branch site (score: 3)
                                           taaactata  TA-rich tract