Sequence
atgc intronic sequence ATGC exonic sequence...gaagtttttgttttcccctgttttattgctccctttttgtttacttctgtgagtaaaattggttctacacaatctcaaatgctcatgtgttatttttcagATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g01660.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G146190_T01 (Zea mays), 3'ss of exon 2
gaagtttttgttttcccctgttttattgct-ccctttttgtttacttctgtgagtaaaattggttctacacaatctcaaatgctcatgtgttatttt-tcagATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAG
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-tgtttgctagtctccatatgtatacagttgttattattgaggtatcttattattacatactgttaaatgtatgcctgaaaact-atatcttatttcctcagATTTCTCTATGGTGATCAAGCTCGATTTTTTGATGATGAAATCCGTCCAGAGTTGAGGCATTCTAAAACTGGAACCGTTGCTATGGCCAGTGCTGGTGAA
upper sequence: Vv19s0027g01660.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G00460.1 (Glycine max), 3'ss of exon 2
--------------------gaagtttttgttttcccctg--ttttattgctccctttttgtttacttctgtgagtaaaattggttctacacaat-ctcaaatgctca----tgtgttatttttcagATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAG
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gtacggaactggaactgcttgtgcatttagttactgtctagcatttactgatcctttttt--ttaatgtgaactgtgaagtttctgacattgagttctcatttgtgcaatggctttctctttttcagGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATTTGAAGCATTCCAAGACTGGAACAGTTGCCATGGCAAGTGCTGGAGAG
upper sequence: Vv19s0027g01660.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G28380.1 (Glycine max), 3'ss of exon 2
--------------------gaagtttttgttttcccctgt--tttattgctccctttttgtttacttctgtgag---taaaattggttctacacaatctcaaatgctcatgtgttatttttcagATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAG
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gtacgtaactggaactacttgtgcatttagttagtgtctaacatttactgatcctttttttttttaatatgaagtttctgacattgagttctcatttatgcaatggct----ttctctttttcagGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATCTGAAGCATTCCAAGACTGGAACAGTTTCCATGGCAAGTGCTGGAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtgagtaaaattggttctacacaatctcaaatgctcatgtgttatttttcagATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAG
ttatttttc CT-rich tract
tgttattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagtttttgttttcccctgttttattgctccctttttgtttacttctgtgagtaaaattggttctacacaatctcaaatgctcatgtgttatttttcagATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - ttcccct
- - - - - - - - - - - - - - ctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt