Sequence
atgc intronic sequence ATGC exonic sequence...gttattctattctgaatatttggtaaaattagaattcatgtactgaacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTTTCGAAACTTGGAATGCAGCTTCTTCACAGGAGGGATCAAAACCCAATTGGAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G52890.1 (Glycine max), 3'ss of exon 2
---gttattctattctgaatatttggtaaaattagaattcatgtactgaacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTTTCGAAACTTGGAATGCAGCTTCTTCACAGGAGGGATCAAAACCCAATTGGAAT--
| || ||| | | | | || || || || || | ||| | || ||| || | || || || || |||||||||||||||||||||| ||||| ||||| || || || ||||| ||||||||| |||| ||||||||||||||||||| |||| |||| ||
tatgcctttacatttgtggtgctgctttatgctaatgttttggttgaaaaatgttctttggtttataaaatt--cttataatttctgattcgtggtgttataGATGTGGTGAGGGATGATCCAACAAATAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCA---TCTTCACAGGAGGGATCAACACCCTCTTGGGATAC
upper sequence: Vv19s0027g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G10060.1 (Glycine max), 3'ss of exon 1
--gttattctattctgaatatttggtaaaattagaattcatgtactgaacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTTTCGAAACTTGGAATGCAGCTTCTTCACAGGAGGGATCAAAACCCAATTGGAAT---
| || ||| | | | | || || || || || | ||| | || ||| || | || || || || |||||||||||||||||||||| |||||||||| || || || ||||| ||||||||| ||||||||| || ||||||||||| |||| |||| ||
atgcctttacatttgtggtgctgctttatgctaatgttttggttgaaaaatgttctttggtttataaaatt--cttataatttctgattcgtggtgttatagATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCAGCTTC---ACCGGAGGGATCAACACCCTCTTGGGATACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTTTCGAAACTTGGAATGCAGCTTCTTCACAGGAGGGATCAAAACCCAATTGGAAT
gcttgat putative branch site (score: 5)
ttgatatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttattctattctgaatatttggtaaaattagaattcatgtactgaacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTTTCGAAACTTGGAATGCAGCTTCTTCACAGGAGGGATCAAAACCCAATTGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT