Sequence
atgc intronic sequence ATGC exonic sequence...atgttgtgttcttgtacaaatttacatagaaatttgtgtctaatgttgtgtttaattcttctatttattacaagtttaatgctattgttttgttaaacagGAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCTGGTGATGTTCGGATGACAGATACCCGCCAGGATGAAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g00760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G18110.1 (Glycine max), 3'ss of exon 3
atgttgtgttcttgtacaaatttacatagaaatttgtgtctaatgttgtg-----tttaattcttctatttattacaagtttaatgctattgttttgttaaacagGAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCTGGTGATGTTCGGATGACAGATACCCGCCAGGATGAAGC
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---ctgtgtagctgttta--ttagcatgtgatgttttttcaagttatataattgctttacttttcttgttcactgataatttattgttttgcttttgaattacagGAAAATCAACCCTCACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCCGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGC
upper sequence: Vv19s0027g00760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G40860.1 (Glycine max), 3'ss of exon 3
atgttgtgttcttgtacaaatttacatagaaatttgtgtctaatgttgtgtttaattcttctatttattacaagtttaatgctattgttttgttaaacagGAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCTGGTGATGTTCGGATGACAGATACCCGCCAGGATGAAGC
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atttttagctgtttatcagaatgcaatgttttttcaaaatatataatccctacacttcgcttgcatactgacaatttattgctttgcttttgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCAGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110723602|gb|EE101104.1|EE101104EST: CATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG GAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTC
genomic: CATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATGgtattaaatc ... tgttaaacagGAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgtttaattcttctatttattacaagtttaatgctattgttttgttaaacagGAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCTGGTGATGTTCGGATGACAGATACCCGCCAGGATGAAGC
gtttaat putative branch site (score: 4)
ttgtttt putative PPT
tttaattcttctattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgttgtgttcttgtacaaatttacatagaaatttgtgtctaatgttgtgtttaattcttctatttattacaagtttaatgctattgttttgttaaacagGAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCTGGTGATGTTCGGATGACAGATACCCGCCAGGATGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-tgttgtg
- - tgtgttc
- - - - - - - -acaaatt
- - - - - - - - - - - - -atagaaa