Sequence
atgc intronic sequence ATGC exonic sequence...tattcatacatcttacaattttaagcattatccttttcctttttcaaaagttcactaatggaatttttttttccactctcaactttgatgtaacctgcagGAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCAGAAGCAGCAGGCAAGGCAATAACAAGCAACATGGGGAATGGGTACTATGACAACATGA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110702873|gb|EE079226.1|EE079226EST: CGCCTCCAAAGCCCTCTCACCCCACCTGCCATTCCTTCTCTCAAG GAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCATAAGCAGCA
genomic: CGCCTCCAAGGCCCTCTCACCCCACCTGCCATTCCTTCTCTCAAGgtacctcttc ... taacctgcagGAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCAGAAGCAGCA
EST:
gi|161713712|gb|FC063743.1|FC063743EST: AGTTTCGCCTCCAAGGCCCTCTCACCCCACCTGCCATTCCTTCTCTCAAG GAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCAGAAGCAGCA
genomic: AGTTTCGCCTCCAAGGCCCTCTCACCCCACCTGCCATTCCTTCTCTCAAGgtacctcttc ... taacctgcagGAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCAGAAGCAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaagttcactaatggaatttttttttccactctcaactttgatgtaacctgcagGAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCAGAAGCAGCAGGCAAGGCAATAACAAGCAACATGGGGAATGGGTACTATGACAACATGA
taatggaatttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattcatacatcttacaattttaagcattatccttttcctttttcaaaagttcactaatggaatttttttttccactctcaactttgatgtaacctgcagGAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCAGAAGCAGCAGGCAAGGCAATAACAAGCAACATGGGGAATGGGTACTATGACAACATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - catacat
- - - - - - - - - - ttaagca
- - - - - - - - - - - - - - - - - - - - - ttcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggaa