Sequence
atgc intronic sequence ATGC exonic sequence...gtgttgttagatgcttgttgtttggcactctttttatcatttttttaactcatagtttaaaacacgtgtatgtgattctatcaaacattatatgggctagGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 2
-gtgttgttagatgcttgttgtttggcactctttttatcatttttttaactcatagtttaaaacacgtgtatgtgattct-atcaaacattatatgggctagGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAG
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tacttgatgaggtcctaaat-ttggataccttgttttcaattcttacaacttttcttttatctta-atgattctaacacttattttttgtcatatgatgcagGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G08180.1 (Glycine max), 3'ss of exon 2
gtgttgttagatgcttgttgtttggcactctttttatcatttttttaactcatagtttaaaacacgtgtatgtgattc---tatcaaacattatatgggctagGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAG-
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--ttcatgaggtcctaagt-ttggttaccttgttttcaattcttacaacttttcttttatctta-atgattcttactcactcattttttgtcatatgatgcaggTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 3'ss of exon 2
----gtgttgttagatgcttgttgtttggcactctttttatcatttttttaactcatagtttaaaacacg-tgtatgtgattctatcaaacattatatgggctagGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAG
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gtgagttctgcttttgctttcatttttgattaatatatggtcgtggataaaa---aaagcttgacgaatggtcttgattgatatgttgtgacttgaattggttagGTGTTGCTGGAGGCGCAGCATCGGGAAAGACTACTGTTTGTGATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgttgttagatgcttgttgtttggcactctttttatcatttttttaactcatagtttaaaacacgtgtatgtgattctatcaaacattatatgggctagGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAG
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-----------------gtgagagtcgtggtggattttagtttaccaaag-atggttagaaaca-gaaaatgttaaa-tagaaaatgttgttt---tcagGAGTTGCTGGAGGTGCAGCATCCGGGAAAACAACTGTCTGTGATATGATTATGCAGCAACTGCATGATCAGAGAGCTGTTGTTGTAAATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718287|gb|FC066969.1|FC066969EST: ACCATCAACCTCAGCCGCTGAAAGTGTACATAAACAACCCTTTGTCATTG GTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTA
genomic: ACCATCAACCTCAGCCGCTGAAAGTGTACATAAACAACCCTTTGTCATTGgtaagtgctg ... tatgggctagGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taactcatagtttaaaacacgtgtatgtgattctatcaaacattatatgggctagGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAG
ttttaac putative branch site (score: 2)
tatcaaacattatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgttgttagatgcttgttgtttggcactctttttatcatttttttaactcatagtttaaaacacgtgtatgtgattctatcaaacattatatgggctagGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - -tgcttgt
- - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - aactcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacat