1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gactctaatatatgtcagttacaccttttaatttgaagtttctatgtattgcaaacgggagtggaagttcaattggtctttaacctcttgcctcttgcagTGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGAGTATGCACATCGTATGTGGGGAAGGGCATTGGGTATCATGTTTGCTCTG
species | Vitis vinifera |
transcript | Vv19s0015g01340.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACTGGTTGGCTGAGTTTGAGAAATATAAGCAATCTCCTGAGTACAAGCG TGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGAEST: gi|110387855|gb|EC952553.1|EC952553
genomic: GACTGGTTGGCTGAGTTTGAGAAATATAAGCAATCTCCTGAGTACAAGCGgttagtgcaa ... cctcttgcagTGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGA
EST: GACTGGTTGGCTGAGTTTGAGAAATATAAGCAATCTCCTGAGTACAAGCG TGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGAEST: gi|110730089|gb|EE106773.1|EE106773
genomic: GACTGGTTGGCTGAGTTTGAGAAATATAAGCAATCTCCTGAGTACAAGCGgttagtgcaa ... cctcttgcagTGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGA
EST: GACTGGTTGGCTGAGTTTGAGAAATATAAGCAATCTCCTGAGTACAAGCG TGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGA
genomic: GACTGGTTGGCTGAGTTTGAGAAATATAAGCAATCTCCTGAGTACAAGCGgttagtgcaa ... cctcttgcagTGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGA
gtattgcaaacgggagtggaagttcaattggtctttaacctcttgcctcttgcagTGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGAGTATGCACATCGTATGTGGGGAAGGGCATTGGGTATCATGTTTGCTCTG
ctttaac putative branch site (score: 3)
cctcttgcctcttgc CT-rich tract
ttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactctaatatatgtcagttacaccttttaatttgaagtttctatgtattgcaaacgggagtggaagttcaattggtctttaacctcttgcctcttgcagTGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGAGTATGCACATCGTATGTGGGGAAGGGCATTGGGTATCATGTTTGCTCTG
- - - - - - - - - - acacctt
- - - - - - - - - - - - - - - - - - - - -ctatgta
- - - - - - - - - - - - - - - - - - - - - - - - -tgcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gggagtg