Sequence
atgc intronic sequence ATGC exonic sequencegtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G47230.1 (Glycine max), 3'ss of exon 2
gtaattcttcaattccattttattgttattaattttaattaatgtt--attttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC
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gtacttttttcagtcacacttatgtttgaattagttagttattgttcagtacttgcataaccccttgaaatagtactaatttttt-----gttgtttttct----atatgtacagAACATGCATCTATGCAACGGATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCCCTAGACCCAAC
upper sequence: Vv19s0015g01120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G01520.1 (Glycine max), 3'ss of exon 1
gtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC
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gtacttttttcacactaagttagaattagttatttt--tcagtact----tgcataacccc-ttgaaatagtactaattttttg--------ttgtt-ttggtatatgtacagAACATGCATCTATGCAACGGATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGAAGACACCCCCTAGACCCAAC
upper sequence: Vv19s0015g01120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G08190.1 (Glycine max), 3'ss of exon 1
gtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC-----------------------------------------------
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---------------------------------------------------------tatccttttct--gtactaatttgaatagt-actgtttcttttggtttatgcacagagcatgcatcactgcagcctataactgaaaagagtgatgtgtacagtTTTGGCATGGTTCTACTTGAGGTTCTCACAGGAAGGCACCCATTAGACCCAACTCTACCAAGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTGT
upper sequence: Vv19s0015g01120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G44620.1 (Glycine max), 3'ss of exon 1
gtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC
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--aaaattttaagaaacttaaaacacattttatcttttctg-tactagattgattaaccc--tttgaatagtactaattttctg--------ttgcttttggtttatgcacagAGCATGCATCACTGCAGCCTATAACTGAAAAGAGTGATGTGTACAGTTTTGGCATGGTTCTACTTGAGGTTCTCACAGGAAGGCACCCATTAGACCCAAC
upper sequence: Vv19s0015g01120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G26540.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC
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---------------------------gtaagcttgagaaagtacttgtacacttaactaagtttgg--agttttgatttt---gatttgttttgtttgttgggtttta-cagAACATGCTTCGATGCAACGTATTACCGAGAAGAGCGATGTTTATAGTTACGGGGTGGTATTGTTAGAGGTTTTAACCGGAAAGCATCCGTTAGATCCGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706099|gb|FC057158.1|FC057158EST: AATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTG AACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTG
genomic: AATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttc ... gtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTG
EST:
gi|161715960|gb|FC067138.1|FC067138EST: AATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTG AACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTG
genomic: AATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttc ... gtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC
cattaat putative branch site (score: 3)
attaataatgattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG