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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatagaaatgttgtgccattttacatttaagaaattttctgctatgatcttcttgagccagacatcagctcttgacgggagactactgattttcatttcagaggaatttagtacaaatgatatcttatatatatatcttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAGGCAGGCAACTGACTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTG

Basic information

species Vitis vinifera
transcript Vv19s0015g01010.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G17190.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagaatagaaatgttgtgccattttacatttaagaaattttctgctatgatcttcttgagccagacatcagctcttgacgggagactactgattttcatttcagaggaatttagtacaaatgatatcttatatatatatcttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCT---GCAAGGCAGGCAACTGACTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTG
                                                             |  ||| |  |||| |      || | |||     ||||      || |  | |    |||  | | ||| | | | |    ||| ||||| ||||||||||| || |||||||| ||||| ||||||||| || |   ||||||     |  |||| ||  | ||   ||| ||  ||||||  || ||   
-------------------------------------------------------------gtgagaga--agct-tcactcagacattacc----ttcaaacttaagcagctca---taaacaaaa-cttgtgtgtgttctgttttgcagGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTGTTGAAGCAAGGTCAAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCTCTTGG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718315|gb|FC067264.1|FC067264
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|161707433|gb|FC057709.1|FC057709
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|110702878|gb|EE079232.1|EE079232
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|110396453|gb|EC962139.1|EC962139
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|110729204|gb|EE105291.1|EE105291
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|71877000|gb|DT026055.1|DT026055
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|30256278|gb|CB972121.1|CB972121
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|46917987|gb|CN547316.1|CN547316
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|71860763|gb|DT009818.1|DT009818
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|110698392|gb|EE075834.1|EE075834
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|77579770|gb|DV218763.1|DV218763
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|110375001|gb|EC939952.1|EC939952
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|71855535|gb|DT004590.1|DT004590
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|37189469|gb|CF608818.1|CF608818
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|110687343|gb|EE064671.1|EE064671
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|71855094|gb|DT004149.1|DT004149
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
EST: gi|46917875|gb|CN547204.1|CN547204
EST:     ATGTTGGACTACAATGTACCTGGAG                         GAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG
genomic: ATGTTGGACTACAATGTACCTGGAGgtgagaatag ... cttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatttcagaggaatttagtacaaatgatatcttatatatatatcttttggcagGAAAGCTAAATCGAGGGCTCTCTGTTGTTGACAGCTACAAGTTGCTGCAAGGCAGGCAACTGACTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTG
                                          tatctttt  CT-rich tract
             aatttagtacaaatga  TA-rich tract