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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttgtctcttaaaccctttttggttcattattcctggttttttgatatttagctcatagcttaccttggaaattgcagGGTCGTGGGACTGCACTGAAAGATATACCTAATG

Basic information

species Vitis vinifera
transcript Vv19s0015g00430.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031373|gb|FQ445398.1|FQ445398
EST:     CCATTGAAAGAGACTCAACAAAGGAATTTCATATCGAAAAG                         GGTCGTGGGACTGCACTGAAAGATATACCTAATG
genomic: CCATTGAAAGAGACTCAACAAAGGAATTTCATATTGAAAAGgtcttgtctc ... gaaattgcagGGTCGTGGGACTGCACTGAAAGATATACCTAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattattcctggttttttgatatttagctcatagcttaccttggaaattgcagGGTCGTGGGACTGCACTGAAAGATATACCTAATG
                                  agcttac  putative branch site (score: 3)
              ttttttgatattta  TA-rich tract