Sequence
atgc intronic sequence ATGC exonic sequencegtcagttgcccgacataattgacttaatttttttcatttgtctttcaaatgtatgctgatatatatgtcatgaacttgatgctgcagGGCTGTATAGGTATAGAGTAGGAGATGTGCTCCGTGTGGCCGGATTCAAGAACAAGGCACCCCAGTTCAACTTCGTATGCCGGAAGAATGTGGTGTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g04690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G17510.1 (Glycine max), 3'ss of exon 2
-------gtcagttgcccgacataattgact-taatttttttcatttgtctttcaaatgtatgctgata----tatatgtcatgaacttgatgc-tgcagGGCTGTATAGGTATAGAGTAGGAGATGTGCTCCGTGTGGCCGGATTCAAGAACAAGGCACCCCAGTTCAACTTCGTATGCCGGAAGAATGTGGTGTTGAG
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atgtttttttttttttttatcttaagataccacaaaattggacatgggtttggtgattgacaattggcaattttttattttttgctttttgtgtgctcagGATTGTATCGTTACAGAGTTGGTGATGTGCTGAGGGTGGCTGGATTCAAGAACAAGGCACCCCAATTCAACTTTGTGTGCAGAAAGAACGTGGTGTTGAG
upper sequence: Vv19s0014g04690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G40860.1 (Glycine max), 3'ss of exon 2
--------gtcagttgcccgacataat-tgacttaatttttttcatttgtctttcaaatgtatgctgatatat----atgtcatgaacttgatgctgcagGGCTGTATAGGTATAGAGTAGGAGATGTGCTCCGTGTGGCCGGATTCAAGAACAAGGCACCCCAGTTCAACTTCGTATGCCGGAAGAATGTGGTGTTGAG
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ttttaaaaccttgatttttactttaacataacacaaaattggacatgggtttgatgattgacaattgacaattgacaatttttttttttttgtttttcagGTTTGTATCGTTACAGAGTTGGTGATGTGCTGAGGGTGGCTGGATTCAAGAACAAGGCACCCCAATTCAACTTTGTGTGCAGAAAGAACGTGGTGTTGAG
upper sequence: Vv19s0014g04690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G54510.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------------gtcagttgcccgacataattgacttaattttt--ttcatttgtctttcaaatgtatgctgatatatatgtcatgaacttgatgctgcagGGCTGTATAGGTATAGAGTAGGAGATGTGCTCCGTGTGGCCGGATTCAAGAACAAGGCACCCCAGTTCAACTTCGTATGCCGGAAGAATGTGGTGTTGAG
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gtaagaaaaccaaccacctttcattgatttgctttggttaccaaaagattgaatctttccaactaaaagtgagaatcttcaattcatttgtttacaaaagattgaatgttgtgt-tgttttgtgattttctatgcagGGCTTTACAGGTACAGAGTGGGTGATGTCCTAAGCGTGGCTGGTTTCAAGAACAATGCGCCTCAGTTCAGCTTCATATGCCGCAAGAACGTGGTCTTAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110730151|gb|EE106899.1|EE106899EST: CGATGTCAAGCTTGGGCAGGAGTATGAGCTGGTCGTCACCACTTATGCCG GGCTGTATAGGTATAGAGTAGGAGATGTGCTCCGTGTGGCCGGATTCAAGA
genomic: CGATGTCAAGCTTGGGCAGGAGTATGAGCTGGTCGTCACCACTTATGCCGgtcagttgcc ... gatgctgcagGGCTGTATAGGTATAGAGTAGGAGATGTGCTCCGTGTGGCCGGATTCAAGA
EST:
gi|30295779|gb|CB972573.1|CB972573EST: GATGTCAAGCTTGGGCAGGAGTATG-GANTGGTCGTCACCACTTATGCCG GGCTGTATAGGTAT
genomic: GATGTCAAGCTTGGGCAGGAGTATGAGC-TGGTCGTCACCACTTATGCCGgtcagttgcc ... gatgctgcagGGCTGTATAGGTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcatttgtctttcaaatgtatgctgatatatatgtcatgaacttgatgctgcagGGCTGTATAGGTATAGAGTAGGAGATGTGCTCCGTGTGGCCGGATTCAAGAACAAGGCACCCCAGTTCAACTTCGTATGCCGGAAGAATGTGGTGTTGAG
tgatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagttgcccgacataattgacttaatttttttcatttgtctttcaaatgtatgctgatatatatgtcatgaacttgatgctgcagGGCTGTATAGGTATAGAGTAGGAGATGTGCTCCGTGTGGCCGGATTCAAGAACAAGGCACCCCAGTTCAACTTCGTATGCCGGAAGAATGTGGTGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA