Sequence
atgc intronic sequence ATGC exonic sequence...cctccttgcaaagcaaattttttaacattattacttttgttttacttgaaatgtgcaattattaattattaccacgtttttatcatatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAGGGGCATTCAGCCTGGGGAAGAGCTATTACCAGAGGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g03910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G22240.1 (Glycine max), 3'ss of exon 14
cctccttgcaaagcaaattttttaacattattacttttgttttacttgaaatgtgcaattattaattattaccacgtttttatcatatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAGGGGCATTCAGCCTGGGGAAGAGCTATTACCAGAGGCTG
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--------------gtatgttatgtctttat-atgcctattaacgttaaaa-----aggtattatatattt-----tgttaagcatttttcttctttcagATGTGTACATTGATGTTCCTGATATCATAGATATCAGTCACATGCGCAGCAAAGGTCAGCAGTCTGGGGAAGAGCTATTACCTGATGGTG
upper sequence: Vv19s0014g03910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 14
---cctccttgcaaagcaaattttttaacattattacttttgttttacttgaaatgtgcaattattaattattaccacgtttttatcatatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAGGGGCATTCAGCCTGGGGAAGAGCTATTACCAGAGGCTG
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gtatgttttgtctttatatgcctattaatgttaaaaagt--attatattttaaagatt---tttctgatctatatattttgttaagcatttttcttctttcagATGTGCACATTGATGTTCCTGATATCATAGATATCAGTCACATGCGCAGCAAAGGTCAGCAGTCTGGGGAAGAGCTATTACCTGATGGTG
upper sequence: Vv19s0014g03910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 15
-----cctccttgcaaagcaaattttttaacattattacttttgttttacttgaaatgtgcaattattaattattaccacgtttttatcatatttgactgtc-cagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAGGGGCATTCAGCCTGGGGAAGAGCTATTACCAGAGGCTG
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gtctctttctttctgaaacaatgatccttataatgtt-cccctattgtccctg---tatataaatacttattatc---------ctttcttgatttactgtggcagATGTATACATTGATGTTCCGGATGTTATTGATATCAGCCACATGCGTAGCAAAGGACTCCAACCTGGGGAAGAACTGTTGCCAGATGGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaaatgtgcaattattaattattaccacgtttttatcatatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAGGGGCATTCAGCCTGGGGAAGAGCTATTACCAGAGGCTG
aattattaattattac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctccttgcaaagcaaattttttaacattattacttttgttttacttgaaatgtgcaattattaattattaccacgtttttatcatatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAGGGGCATTCAGCCTGGGGAAGAGCTATTACCAGAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
cctcctt
- - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - -aatgtgc