Sequence
atgc intronic sequence ATGC exonic sequence...atagagatatttcaatatttcatagaaaacagcctattaaaattatgttcttgttttcacccaacctattataatccgattggtatgctttcctatgcagGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g03900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G22240.1 (Glycine max), 3'ss of exon 18
atagagatatttcaatatttcatagaaaacagcctattaaaatt-----atgttcttgttttcacccaacctattat--aatccgattggtatgctttccta--tgcagGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAA
|||| | | | | || | |||||||| || ||||||||| | | | || || ||| | | | || | ||| ||| |||||||| ||| | |||||||||| |||||| || || |||||||| |||||||||||||| || | || ||||| || |||| ||||||||
-------aattttgttgggt--tgggtggtagggtgttaaaattgtttcatcttcttgtttgtattaatttaacaatctgattttatttttcaacctcccgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGGCCACTATGTTGCTCACATTTTAAAAGATGGTAGATGGGCAATTTTCAA
upper sequence: Vv19s0014g03900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 18
atagagatatttcaatatttcatagaaaacagcctattaaaattatgt--tcttgttttcacccaacc--tattataatccgattggtatgctttcctatgc-agGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAA
| | || || | | | | | |||||| | | |||||||| | | | | | || ||| || |||| || | || ||| |||||||| ||| | ||||||||| ||||||||| ||||||||||||||||||||||| || | || |||||||| |||| ||||||||
-----gtttttgttgggttgggtggtagggtgttaaaaaaaattgtttcatcttgtttctattaatttaacagtctgattttatttttaacctttggcattccagAATATCGACTTATGGGGATTTTGAGCCACAGTGGAACCTCTTTGCAGTGTGGTCACTATGTTGCTCACATTTTAAAAGATGGAAGATGGGCAATTTTCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttcttgttttcacccaacctattataatccgattggtatgctttcctatgcagGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAA
tgctttcct CT-rich tract
tattataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagagatatttcaatatttcatagaaaacagcctattaaaattatgttcttgttttcacccaacctattataatccgattggtatgctttcctatgcagGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
atagaga
- - - - - - - - - - - - gaaaaca
- - - - - - - - - - - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct