Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712690|gb|FC062262.1|FC062262EST: TGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAG TTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCG
genomic: TGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAGgtagatatta ... tttgatgcagTTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCG
EST:
gi|161715700|gb|FC067804.1|FC067804EST: TGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAG TTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCG
genomic: TGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAGgtagatatta ... tttgatgcagTTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCG
EST:
gi|30135589|gb|CB920927.1|CB920927EST: TGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAG TTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCG
genomic: TGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAGgtagatatta ... tttgatgcagTTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCG
EST:
gi|30129808|gb|CB915147.1|CB915147EST: TGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAG TTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCG
genomic: TGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAGgtagatatta ... tttgatgcagTTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaagtacaattgacgcttaacaatctcgtatctgggtttcttgttttgatgcagTTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCGAAACCCATAGCAGCTGTACTTCCCAGCAAAGCGCACAGCAACGGCTCGT
tttcttgtttt CT-rich tract
ttaacaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatattaaatattatcagttaaaccaaaaacttaaattttttcagtactaaacaataatatcaagtacaattgacgcttaacaatctcgtatctgggtttcttgttttgatgcagTTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCGAAACCCATAGCAGCTGTACTTCCCAGCAAAGCGCACAGCAACGGCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG