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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttcataccttttctgacctgctttatcaattatcggcttctaaattatatcgtggatgaagctgcatttgattctacgatgggcatactgctgactgaagggactctgttttgtgtttccagGCTGTGGAATTACAAAAGCTTATTTTGGCCCATAATGATATCGAATCATTGAGAGAAGACTTGAAAAATTTATCCCTGTTGTCTGTGTTGAATCTTAGTA

Basic information

species Vitis vinifera
transcript Vv19s0014g03000.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860584|gb|DT009639.1|DT009639
EST:     AGGTATACAGAAGTCTGGATGCAATCGGGGAGGGGGAAAAGTGGTGGGAG                         GCTGTGGAATTACAAAAGCTTATTTTGGCCCATAACGATATCGAATCATTG
genomic: AGGTATACAGAAGTCTGGATGCAATCGGGGAGGGGGAAAAGTGGTGGGAGgtattcttca ... gtgtttccagGCTGTGGAATTACAAAAGCTTATTTTGGCCCATAATGATATCGAATCATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattctacgatgggcatactgctgactgaagggactctgttttgtgtttccagGCTGTGGAATTACAAAAGCTTATTTTGGCCCATAATGATATCGAATCATTGAGAGAAGACTTGAAAAATTTATCCCTGTTGTCTGTGTTGAATCTTAGTA
                     tgctgac  putative branch site (score: 2)
                                              tgtttcc  putative PPT