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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagtgttcttgataaatccagtaatattttatattaagcttaatctatgtttgtttactttgatatgcaagctctgaggttttatttatatattggcagGTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGCATCGTGATATAAAGGGTTCCAACCTTCTAATTGACA

Basic information

species Vitis vinifera
transcript Vv19s0014g02670.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965441|gb|GW839012.1|GW839012
EST:     ATCTANCAGGTCTCGCCTCACACCCTGNTCTCAAGTTTACAGAACCACAG                         GTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGC
genomic: ATCTAGCAGGTCTCGCCTCACACCCTGGTCTCAAGTTTACAGAACCACAGgtatttgtgc ... atattggcagGTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgtttgtttactttgatatgcaagctctgaggttttatttatatattggcagGTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGCATCGTGATATAAAGGGTTCCAACCTTCTAATTGACA
             ctttgat  putative branch site (score: 5)
                                aggttttatttatata  TA-rich tract