Sequence
atgc intronic sequence ATGC exonic sequence...gggggtaagtctagggtttaggctattttcagaataaacctttcagaagttcgtatgttctttctcatcattattattttaatcccactatttgaaacagGAGGAGGATTCTGAAGAATATGGAAGTCCAGTTGTTTTGGCATCTGCAATTGCAGACATCATAAAATCCCGAACGGAGGCATATTTGAAGAAGACTAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G36650.1 (Glycine max), 3'ss of exon 1
--gggggtaagtctagggtttaggctattttcagaataaacctttcagaagttcgtatgttctttctcatcattattattttaatcccactatttgaaac--agGAGGAGGATTCTGAAGAATATGGAAGTCCAGTTGTTTTGGCATCTGCAATTGCAGACATCATAAAATCCCGAACGGAGGCATATTTGAAGAAGACTAAAA
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ttggttttaaatttacaatt---attattattatttttaatattattattgttattatttttggtat-gccaatgtgtttcattattgagcattggaaacacagGAGGAGGATTCAGAAGAGTATGGAAGTCCTGTGGTTTTGGCATCTGCCATTGCAGACATTATAAAGTCCCGAACTGAGGCACTTTTGAAGAAAACCAAGA
upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G23480.1 (Glycine max), 3'ss of exon 1
gggggtaagtctagggtttaggctattttcagaataaacctttcagaagttcgtatgttctttct-catcattattattttaatcccactatttgaa--acagGAGGAGGATTCTGAAGAATATGGAAGTCCAGTTGTTTTGGCATCTGCAATTGCAGACATCATAAAATCCCGAACGGAGGCATATTTGAAGAAGACTAAAA
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-cggctttgac-agcatttcttttaaatttacaattattattatatta-tttatttatttttggtatgccaatatgtttgattattgagtattggaaatacagGAGGAGGATTCAGAAGAGTATGGAAGTCCTGTGGTTTTGTCATCTGCCATTGCAGACATTATAAAGTCCCGAACTGAGGCACTTTTGAAGAAAACCAAGA
upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G53140.1 (Arabidopsis thaliana), 3'ss of exon 1
-----------gggggtaagtctagggtt---taggctattttcagaataaacctttcagaagttcgtatgttctttctcatcattattatt-ttaatcccacta-tttga--aacagGAGGAGGATTCTGAAGAATATGGAAGTCCAGTTGTTTTGGCATCTGCAATTGCAGACATCATAAAATCCCGAACGGAGGCATATTTGAAGAAGACTAAAA
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gtaaatcaaacctagacgattttgtaattcgttacttctgcttttgatttagatttctaggattttttttgttgaat-tggcgattttgattactgatttggtaagtttgattggtagGATGAAGATTCTGAAGAATATGGAAGTCCAATTGTTTCGGCTACAGCAGTAGCAGATGTAATTAGGTCTAGAACAGAGGCACTTTTGAAGAAGACGAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaagttcgtatgttctttctcatcattattattttaatcccactatttgaaacagGAGGAGGATTCTGAAGAATATGGAAGTCCAGTTGTTTTGGCATCTGCAATTGCAGACATCATAAAATCCCGAACGGAGGCATATTTGAAGAAGACTAAAA
ttttaat putative branch site (score: 3)
tttctcatcattatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gggggtaagtctagggtttaggctattttcagaataaacctttcagaagttcgtatgttctttctcatcattattattttaatcccactatttgaaacagGAGGAGGATTCTGAAGAATATGGAAGTCCAGTTGTTTTGGCATCTGCAATTGCAGACATCATAAAATCCCGAACGGAGGCATATTTGAAGAAGACTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
gggggta
- - - - - - - - - - - - - - - - -ataaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccact