Sequence
atgc intronic sequence ATGC exonic sequence...taacttaattcaaataggatctattgagatgttaaattttttggttcatacctttttattgccaattttttattcttgttttcccatatttctgtcacagGTTTGTGAGGCCTTCAGAAATGTCTGAGCAAAGAATAAATGAATATATTGAAGGAAAATATGGAAAATTAGGGGTTGATCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g02090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g24594.6 (Oryza sativa), 3'ss of exon 2
taacttaattcaaataggatctattgagatgttaaattttttggt----tcatacctttttattgcca--attttttattcttgttttcccatatttctgtcacagGTTTGTGAGGCCTTCAGAAATGTCTGAGCAAAGAATAAATGAATATATTGAAGGAAAATATGGAAAATTAGGGGTTGATCG-------------------
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------catattgttttattcgtttgtgatgttaatcctttctgtattttcttgccttttcagtaatatcagttactatctctatcccctcgtgtgttgcttgtagGTTTGTACACCCTACTGCGATGAGTGAGCAAAGAATAAGAGAATATATTGAAGGGAAATATGGGAAATTTGGAGTTGACCGGTATTTGTAGCACTATTTA
upper sequence: Vv19s0014g02090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g24594.5 (Oryza sativa), 3'ss of exon 2
taacttaattcaaataggatctattgagatgttaaattttttggt----tcatacctttttattgcca--attttttattcttgttttcccatatttctgtcacagGTTTGTGAGGCCTTCAGAAATGTCTGAGCAAAGAATAAATGAATATATTGAAGGAAAATATGGAAAATTAGGGGTTGATCG
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------catattgttttattcgtttgtgatgttaatcctttctgtattttcttgccttttcagtaatatcagttactatctctatcccctcgtgtgttgcttgtagGTTTGTACACCCTACTGCGATGAGTGAGCAAAGAATAAGAGAATATATTGAAGGGAAATATGGGAAATTTGGAGTTGACCG
upper sequence: Vv19s0014g02090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G143525_T01 (Zea mays), 3'ss of exon 2
taacttaattcaaataggat--ctattgagatgttaaattttttggttcatacct-ttttattgccaattttttattcttgttttcccatatttctgtcacagGTTTGTGAGGCCTTCAGAAATGTCTGAGCAAAGAATAAATGAATATATTGAAGGAAAATATGGAAAATTAGGGGTTGATCG
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---tccacaccgtattgtacacttaagtggattctgatactattgctgtacttctattatttttctgaattggcctctgtcctctcttgtttgttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG
upper sequence: Vv19s0014g02090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G35090.1 (Glycine max), 3'ss of exon 2
taacttaattcaaataggatctattgagatgttaaattttttggttcatacctttttattgccaattttttattcttgttt---tcccatatttctgtcacagGTTTGTGAGGCCTTCAGAAATGTCTGAGCAAAGAATAAATGAATATATTGAAGGAAAATATGGAAAATTAGGGGTTGATCG
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---gttagtttcttttgaattttttaaaaaaaaacatatgaaaatcatcattttttgcttatcttaaagttatacttgcattgatcctttaactgtttaacagGTTTGTGAGGCCCTCAAAAATGAGTGAACGAAGAATAAATGAATATGTTGAAGGAAAATATGGAAAATTTGGAGTTCACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatacctttttattgccaattttttattcttgttttcccatatttctgtcacagGTTTGTGAGGCCTTCAGAAATGTCTGAGCAAAGAATAAATGAATATATTGAAGGAAAATATGGAAAATTAGGGGTTGATCG
ttttttattcttgttt CT-rich tract
tttttattgccaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taacttaattcaaataggatctattgagatgttaaattttttggttcatacctttttattgccaattttttattcttgttttcccatatttctgtcacagGTTTGTGAGGCCTTCAGAAATGTCTGAGCAAAGAATAAATGAATATATTGAAGGAAAATATGGAAAATTAGGGGTTGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - aatagga
- - - - - - - - - - - - - - - - - - - - - - - catacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgccaa