1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgcaatttacttaattatcattagtttcttttcacatttacttaattatcatcgattttcgataattaatgtttcttgttatattcttcatgcaaaaatgcaacaatgaagACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGT
species | Vitis vinifera |
transcript | Vv19s0014g01780.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCTACAATACATTTCAGAGCTTGAGCGGAGCGTAACATCTTTACAA ACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGAEST: gi|30134000|gb|CB919338.1|CB919338
genomic: GGAAGCTACAATACATTTCAGAGCTTGAGCGGAGCGTAACATCTTTACAAgtatgcaatt ... aacaatgaagACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGA
EST: GGAAGCTACAATACATTTCAGAGCTTGAGCGGAGCGTAACATCTTTACAA ACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGA
genomic: GGAAGCTACAATACATTTCAGAGCTTGAGCGGAGCGTAACATCTTTACAAgtatgcaatt ... aacaatgaagACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGA
tttcgataattaatgtttcttgttatattcttcatgcaaaaatgcaacaatgaagACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGT
aattaat putative branch site (score: 3)
ataattaatgtttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaatttacttaattatcattagtttcttttcacatttacttaattatcatcgattttcgataattaatgtttcttgttatattcttcatgcaaaaatgcaacaatgaagACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG