Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaatatgtttgagtttggtgcattttatttcatttgagtgctttgatttttgtagtaatttcagggtttggttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG

Basic information

species Vitis vinifera
transcript Vv19s0014g01420.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 2
-----------------gtaaggaatatgtttgagtttggtgcattttatttcattt-gagtgctttgatttttgtagtaatttcagggtttggttg-tttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG
                  | |    | |  || |||  ||    |    |||| ||| | |||  |||||||   |      ||    | ||||||| || |||||| ||||| ||||| |||||||| |||||||||||| ||||  ||||||| |||||||| |||||||| ||  | ||||| || |||
gtgagtgctgctcagttctcatttttgttcttcagtggggaatttagactttcgttttgtgtgtgttgatttaaattaagcctttgttggttggttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG

upper sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S348_15V6.1 (Physcomitrella patens), 3'ss of exon 2
-gtaaggaatatgtttgagtttggtgcattttatttcatttgagtgctttgatttt--tgtagtaatttcagggtt------tggttg------tttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG
 | |||   | | |||   |||  |   |||| |||  | || |||  |||  |||  ||  ||  |    ||||       || | |      | ||||||| || ||||| ||||||||  ||||||||||||||||||| |||||||| ||||| || || || || ||| | ||||| ||||||
tggaagtgtttttttttttttttttttttttttttttgtgtgtgtgtgttgtgtttgctgaggtggtgatggggtggatatgtgatgggcgggatatcagGAAGGGTGATTACTATCGGTATTTGGCGGAGTTCAAGACCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG

upper sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S67_176V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------------------------gtaaggaata-tgtttgagtttggtgcattttatttcattt-gagt--gctttgatttttgtagtaatttcagggtttggttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG
                                                                                     || |  |  | || |    ||  ||||       ||||||| | ||  |   | ||||   ||   || |  |||  ||||     |||||| || ||||| ||||| ||||| || |||||||||||||| || || |||||||| || ||||| || ||| | ||||| || |||
gtacgtgatgttctgagagagaagttattagtgttttgttaggagttttgtttgtgatttatcacaatgtggactacgtggaaaagtgatcataactgctcagattcagtgcgcaagtcttcatttcgcgttggtggtaatttgactaaagatctatgggaatggt---accagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG

upper sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S348_9V6.1 (Physcomitrella patens), 3'ss of exon 2
---gtaaggaatatgtttgagtttggtgcattttatttcatttgagtgctttgatttttgtagtaatttcagggtt------tggttg------tttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG
   ||      | | |||   |||  |   |||| ||   | || ||| | || ||  ||  ||  |    ||||       || | |      | ||||||| || ||||| ||||||||  ||||||||||||||||||| |||||||| ||||| || || || || ||| | ||||| ||||||
gaagtgtttttttttttttttttttttttttttttttgtgtgtgtgtgttgtgtttgctgaggtggtgatggggtggatatgtgatgggcgggatatcagGAAGGGTGATTACTATCGGTATTTGGCGGAGTTCAAGACCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG

upper sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S46_127V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------gtaaggaatatgtttgagtttggtgcattttatttcatttgagtgctttgatttttgtagtaatttcagggtttggttgttt--cagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG
              |  |||     |  |   || |  |    | ||| |   | |  ||   || | | | |  || |  | | | ||| |  |   ||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||| | ||||||||||||
cgagaaggataatctgcggatcgcatccgcagttagctctgactttttgagacgtgacctgaaatctgttttgatatatgcgtgatgggtggggtgatagGAAGGGAGATTACTATCGGTACCTGGCGGAGTTCAAGACCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868950|gb|DT018005.1|DT018005
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71867720|gb|DT016775.1|DT016775
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71877337|gb|DT026392.1|DT026392
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71857701|gb|DT006756.1|DT006756
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|77586927|gb|DV222610.1|DV222610
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71881137|gb|DT030192.1|DT030192
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|77580649|gb|DV219228.1|DV219228
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|33401507|gb|CF207134.1|CF207134
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71859540|gb|DT008595.1|DT008595
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|161716244|gb|FC066507.1|FC066507
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110364728|gb|EC928194.1|EC928194
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71876369|gb|DT025424.1|DT025424
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71881683|gb|DT030738.1|DT030738
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACC
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACC
EST: gi|30251891|gb|CB969624.1|CB969624
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71858192|gb|DT007247.1|DT007247
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTG
EST: gi|71860008|gb|DT009063.1|DT009063
EST:     CTGATTCCGGCTTCTACGACTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|161713475|gb|FC064040.1|FC064040
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|161716569|gb|FC066230.1|FC066230
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|161719421|gb|FC067668.1|FC067668
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71858199|gb|DT007254.1|DT007254
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagG-AAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATG
EST: gi|71859779|gb|DT008834.1|DT008834
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|30130890|gb|CB916229.1|CB916229
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAGGGGGATTATTAT
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTAT
EST: gi|30126672|gb|CB912011.1|CB912011
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|77580824|gb|DV219328.1|DV219328
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71860120|gb|DT009175.1|DT009175
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|33403459|gb|CF209086.1|CF209086
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110690696|gb|EE068079.1|EE068079
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110684625|gb|EE062116.1|EE062116
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|30251888|gb|CB969621.1|CB969621
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110688139|gb|EE066347.1|EE066347
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110700468|gb|EE078544.1|EE078544
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71868345|gb|DT017400.1|DT017400
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110720850|gb|EE097135.1|EE097135
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|161711067|gb|FC058631.1|FC058631
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTGTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71858664|gb|DT007719.1|DT007719
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTA
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTA
EST: gi|110703927|gb|EE081301.1|EE081301
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110700161|gb|EE077885.1|EE077885
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71871805|gb|DT020860.1|DT020860
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71860720|gb|DT009775.1|DT009775
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71857884|gb|DT006939.1|DT006939
EST:     CTGATTCCGGCTTCTACGGCTGGGGAATCCGCTGTTTTTCACTATAAAAT                         GAAAGGGGATTATTATCGGTA
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTA
EST: gi|161712034|gb|FC060050.1|FC060050
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71857775|gb|DT006830.1|DT006830
EST:     CTGATTCCGGTTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71857396|gb|DT006451.1|DT006451
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71861304|gb|DT010359.1|DT010359
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110702703|gb|EE078916.1|EE078916
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71855663|gb|DT004718.1|DT004718
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTA
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTA
EST: gi|33404615|gb|CF210242.1|CF210242
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATCATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|352785466|gb|FQ477680.1|FQ477680
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCCGGCCACGACA
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACC-GGCAATGAGA
EST: gi|110716473|gb|EE091484.1|EE091484
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|161713958|gb|FC063143.1|FC063143
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71864504|gb|DT013559.1|DT013559
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|161717772|gb|FC068161.1|FC068161
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|33404411|gb|CF210038.1|CF210038
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110698951|gb|EE077033.1|EE077033
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71855419|gb|DT004474.1|DT004474
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGA
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGA
EST: gi|71859543|gb|DT008598.1|DT008598
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|30251910|gb|CB969643.1|CB969643
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110359344|gb|EC920679.1|EC920679
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71874184|gb|DT023239.1|DT023239
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|71872622|gb|DT021677.1|DT021677
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG
EST: gi|110688709|gb|EE067573.1|EE067573
EST:     CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAAT                         GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACTGGCAATGAGAG
genomic: CTGATTCCGGCTTCTACGGCTGGTGAATCCACTGTTTTTTACTATAAAATgtaaggaata ... gttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcatttgagtgctttgatttttgtagtaatttcagggtttggttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG
               ctttgat  putative branch site (score: 5)
                                              ttgtttc  putative PPT
                    atttttgtagtaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaggaatatgtttgagtttggtgcattttatttcatttgagtgctttgatttttgtagtaatttcagggtttggttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT