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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaatcaaattcctgcccttttgttcttgcactataattttttctctcctttttttcacctctcttatttcttctactcagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG

Basic information

species Vitis vinifera
transcript Vv19s0014g01390.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os09g14670.1 (Oryza sativa), 3'ss of exon 2
gtttgtaatcaaattcctgcccttttgttcttgcactataattttttctctcctttttt-tcacctctcttatttcttctactcagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG
||| ||   | ||     ||  ||| | ||   |   || || |  | |||  | | |  || |   | | |  |  |    ||||||| ||||||||| | |  ||| | ||| | || || || ||||| ||||| ||||| || |||||||||||||| |||||||||
gttagtcggcgaaacagcgcgattt-gctcacaccacatgatgtagtttctagtctctaatctcgattgtaacattcttatttcagGATTCGGAACTGTCTGGTTCAGCTTTATTCAAAGGATATCACTCCAGATGACAAGCAAGAGCTTGATGAGGCTCTCCAGAGAGAG

upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G473001_T01 (Zea mays), 3'ss of exon 2
gtttgtaatcaaattcctgcccttttgttcttgcactataattttttctctcctttttttcacctctcttatttcttctactcagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG
||| ||   | ||    |||  | | |||      |   | ||  |||   | ||  | |     |   ||||  |     ||||||| || |||||||| |  ||  | ||  | ||||| || ||||| ||||||||||||||||||||||||||||| || ||||||
gttagtttgccaaccagtgcattgtagttgacatgcacaacttcgttcagcctttaatcttgatcccaatattctta----tcagGATACGCAACTGTTTGGTTCAACTCTACTCAAAAGATATCACTCCGGATGATAAGCAGGAACTTGATGAGGCTCTGCAAAGAGAG

upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G473001_T02 (Zea mays), 3'ss of exon 2
gtttgtaatcaaattcctgcccttttgttcttgcactataattttttctctcctttttttcacctctcttatttcttctactcagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG---------------
||| ||   | ||    |||  | | |||      |   | ||  |||   | ||  | |     |   ||||  |     ||||||| || |||||||| |  ||  | ||  | ||||| || ||||| ||||||||||||||||||||||||||||| || ||||||               
gttagtttgccaaccagtgcattgtagttgacatgcacaacttcgttcagcctttaatcttgatcccaatattctta----tcagGATACGCAACTGTTTGGTTCAACTCTACTCAAAAGATATCACTCCGGATGATAAGCAGGAACTTGATGAGGCTCTGCAAAGAGAGGTACTTCTTTCAATC

upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G33380.1 (Glycine max), 3'ss of exon 2
gtttgtaatcaaattcctgcccttttgttcttgcactataatt---ttttctctcctttt------tttcacctctcttat-ttcttctact---cagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG
|||||||   |  ||  |  |  | | || || |  ||| | |   ||| |||     |       ||| |  | || | | ||| ||| |    ||||||  | ||   |||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
gtttgtatcgagttttttttctctcttttgtttctttatgaatagatttactcagaagtgaaggaatttaaattttcatgtgttcctctgccttacagGATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAG

upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G09810.1 (Glycine max), 3'ss of exon 3
gtttgtaatcaaat----tcctgcccttttgttcttgcactataattttttctctcctttttt---------tcacctctcttat----ttcttctactcagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG
||||||| |||  |    |||  ||  |||  | ||||  ||| | |   | |         |         | |  |||| | |     |||||    ||||||  | ||   |||| | ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
gtttgta-tcatgttttttcccccctcttttctgttgctttatgaatagatttacagagaagtgaaggaaactaagttctcatgtggtcctcttccttacagGATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAG

upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G35840.1 (Glycine max), 3'ss of exon 2
---------------------gtttgtaatcaaattcctgcccttttgttcttgcactataattttttc-----tctccttttt-------ttcacctctcttatttct-tctact---cagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG
                      |||    |  | |     |  || | || |     | ||| |||||      || | |  ||       || | || | |  |||   ||| |    ||||||  |||| |||||| | || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
gtttgttacaaaatatagtatttttcagcttcagtattcacttttgtattttctttttttaagtttttgcatagtcacatagttaacaaaattgagctttatggttttcatctgcattgcagGATAAGGAATTGTTTATCTCAATTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTACAAAGGGAG

upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G34560.1 (Glycine max), 3'ss of exon 3
gtttgtaatcaaat-tcctgcccttttgttcttgcactataattttttctctcctttttttcacctct----------------------cttat----ttcttctact---cagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG
|||||| |  |||| |  |    ||  | |   | | |  | |||| | | | |||||||  | || |                      |||||    ||| ||| |    ||||||  |||| |||||| | || || |||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||
gtttgttacaaaatatagtatttttcagcttcagtatt-cacttttgtattttcttttttaaagctgttgcatagttaacaaaattgagccttatggttttcatctgcattgcagGATAAGGAATTGTTTATCTCAATTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTACAAAGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcactataattttttctctcctttttttcacctctcttatttcttctactcagGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAG
           ttttttctctcctttt  CT-rich tract
      tataattttttctct  TA-rich tract