1 5' 3' | 2 5' 3' | 3 5' 3' |
...attgtcatatcattcccttctgccttcagtatcatctgaacctatgacttcccacattatgctaaaatctatctcatgtgatatctaaatttgactacagATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGGATAAGAAACTCACCCAGGCTCAACTAGCTCAA
species | Vitis vinifera |
transcript | Vv19s0014g01260.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTC ATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGGEST: gi|161711515|gb|FC058717.1|FC058717
genomic: CACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTCgtgagtacat ... ttgactacagATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGG
EST: CACTTCTTTGAAC-CAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTC ATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGGEST: gi|110408619|gb|EC974256.1|EC974256
genomic: CACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTCgtgagtacat ... ttgactacagATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGG
EST: CACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTC ATGAACGTGTACGAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGG
genomic: CACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTCgtgagtacat ... ttgactacagATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGG
gacttcccacattatgctaaaatctatctcatgtgatatctaaatttgactacagATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGGATAAGAAACTCACCCAGGCTCAACTAGCTCAA
tgatatctaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtcatatcattcccttctgccttcagtatcatctgaacctatgacttcccacattatgctaaaatctatctcatgtgatatctaaatttgactacagATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGGATAAGAAACTCACCCAGGCTCAACTAGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - cccttct
- - - - - - - - - - -gccttca
- - - - - - - - - - - - - - - - - -ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtga