1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctttgatgtatatatataatgcatattttctcctttaatgttggtacatgtgttgtaaatgtttcaatcctggctcatctgagtgtcctttttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGGTGCTCACACCGAGTACATAATATCACTTGATGCTGATGACATATCTCA
species | Vitis vinifera |
transcript | Vv19s0014g01250.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|351032270|gb|FQ461523.1|FQ461523
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|71872640|gb|DT021695.1|DT021695
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|351056453|gb|FQ454314.1|FQ454314
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|352798883|gb|FQ480732.1|FQ480732
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|161713648|gb|FC062550.1|FC062550
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|110708836|gb|EE086829.1|EE086829
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|352790032|gb|FQ479642.1|FQ479642
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|349817991|gb|FQ407980.1|FQ407980
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|349832891|gb|FQ423013.1|FQ423013
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|77584477|gb|DV221307.1|DV221307
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|351022168|gb|FQ438753.1|FQ438753
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATAGAGGCATGEST: gi|351038773|gb|FQ464639.1|FQ464639
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATGAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|351032812|gb|FQ461701.1|FQ461701
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|161718362|gb|FC066304.1|FC066304
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|351053975|gb|FQ441741.1|FQ441741
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|351051579|gb|FQ450131.1|FQ450131
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|349811397|gb|FQ407623.1|FQ407623
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|351029875|gb|FQ427715.1|FQ427715
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|110730771|gb|EE108231.1|EE108231
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTANTTCGT CATTCACAGATAAGGGGAAATTTCTCTTAACTGCTCGAAGATAAAGGCATGEST: gi|30251916|gb|CB969649.1|CB969649
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|161718790|gb|FC067326.1|FC067326
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTT-CCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|349807495|gb|FQ401488.1|FQ401488
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|349817493|gb|FQ407283.1|FQ407283
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|37186503|gb|CF605856.1|CF605856
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTEST: gi|110714004|gb|EE090419.1|EE090419
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCT
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|351054882|gb|FQ440221.1|FQ440221
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|71889067|gb|DT038122.1|DT038122
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|352782688|gb|FQ476768.1|FQ476768
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTC-CACGATAAGGGGAAGTTTCTCCTAGCTGCTCCAAAATATAGGCATEST: gi|161721414|gb|FC070778.1|FC070778
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACA-GATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCAT
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|294966769|gb|GW837788.1|GW837788
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|352786855|gb|FQ481230.1|FQ481230
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGEST: gi|71871589|gb|DT020644.1|DT020644
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
EST: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGT CATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
genomic: ACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaat ... tttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATG
acatgtgttgtaaatgtttcaatcctggctcatctgagtgtcctttttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGGTGCTCACACCGAGTACATAATATCACTTGATGCTGATGACATATCTCA
tgtcctttttccctc CT-rich tract
taaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgatgtatatatataatgcatattttctcctttaatgttggtacatgtgttgtaaatgtttcaatcctggctcatctgagtgtcctttttccctcagCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGGTGCTCACACCGAGTACATAATATCACTTGATGCTGATGACATATCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - -aatgcat
- - - - - - - - - - - - - tttctcc
- - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcct