1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatttcctaagaaagcattgtttggttgccggggaaaccgaaggaaaaatgatctaaagctcacaaaaatgaatcccacagaaggttgttttttttattctttataaacagctgttttaccatctgggtttgtgagttttctatcttcttcttcagGAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTGGTGGTGGATGAAAAAATAGGGCGCATCCTGAAGCTGGATTCCATCAGTA
species | Vitis vinifera |
transcript | Vv19s0014g00410.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTAACTACACCTTCACAGAGACAAAGGGAGGAGGCACATTTTCCTTTCAG GAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTGEST: gi|110406254|gb|EC971821.1|EC971821
genomic: CTAACTACACCTTCACAGAGACAAAGGGAGGAGGCACATTTTCCTTTCAGgtaatttcct ... tcttcttcagGAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTG
EST: AACTACACCTTCACAGAGACTAAGGGAGGAGGCACATTTTCCTTTCAG GAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTGEST: gi|110408796|gb|EC974438.1|EC974438
genomic: AACTACACCTTCACAGAGACAAAGGGAGGAGGCACATTTTCCTTTCAGgtaatttcct ... tcttcttcagGAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTG
EST: CCAACTACACCTTCACAGAGACTAAGGGAGGAGGCACATTTTCCTTTCAG GAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTG
genomic: CTAACTACACCTTCACAGAGACAAAGGGAGGAGGCACATTTTCCTTTCAGgtaatttcct ... tcttcttcagGAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTG
ttataaacagctgttttaccatctgggtttgtgagttttctatcttcttcttcagGAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTGGTGGTGGATGAAAAAATAGGGCGCATCCTGAAGCTGGATTCCATCAGTA
ttttctatcttcttct CT-rich tract
ttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcctaagaaagcattgtttggttgccggggaaaccgaaggaaaaatgatctaaagctcacaaaaatgaatcccacagaaggttgttttttttattctttataaacagctgttttaccatctgggtttgtgagttttctatcttcttcttcagGAGTATGGAGTTTCAGTCATGATCAAGAAAAATGGATTTTTGGTGGACGTGGTGGTGGATGAAAAAATAGGGCGCATCCTGAAGCTGGATTCCATCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA