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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattcttctttcgggttttttttttcttttttttttcttttttccttttcattacaaatctcaaccatctccgtcaactcaacaccttcattcatccctgttattctctttttatatttattgattgattttgattggtcttacagAAGACCTGGGATGGCGGATAGGTTCTGGAGTAGGCAATACTTTGGCGTGCCCAAGCGGCCTCGATCAGACTATG

Basic information

species Vitis vinifera
transcript Vv18s0166g00240.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188627|gb|CF607976.1|CF607976
EST:     AGGGTTTCAGCAAAATCCCAATTCCACCATCGCAG                         AAGACCTGGGATGGCGGATAGGTTCTGGAGTAGGCAATACTTTGGCGTGCC
genomic: AGGGTTTCAGCAAAATCCCAATTCCACCATCGCAGgtacattctt ... ggtcttacagAAGACCTGGGATGGCGGATAGGTTCTGGAGTAGGCAATACTTTGGCGTGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatccctgttattctctttttatatttattgattgattttgattggtcttacagAAGACCTGGGATGGCGGATAGGTTCTGGAGTAGGCAATACTTTGGCGTGCCCAAGCGGCCTCGATCAGACTATG
         ttattctctttttata  TA-rich tract