Sequence
atgc intronic sequence ATGC exonic sequencegtagatcaaatttgacaagttctatattacattttgttatctgtacattctgtgcaagcatgcatttcaagtttttagttcttctgcattcaactttagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAAAAGAGAGAACATGTACTTCAATCATCCTATGTCATATGGTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0157g00150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G45160.1 (Glycine max), 3'ss of exon 3
gtagatcaaatttgacaagttctatattacattttgttatctgtacattctgtgcaagcatgcatttcaagtttttagttcttctgcattcaactttagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAAAAGAGAGAACATGTACTTCAATCATCCTATGTCATATGGTAG
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gtaggctggattttgaaaattttgaaataaatatcaaaactatctgcctcaatgttgttgtttaat--aaagatttaattatgtacttcttaactttagGACGCAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG------------------------------
upper sequence: Vv18s0157g00150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G11820.2 (Glycine max), 3'ss of exon 3
gtagatcaaatttgacaagttctatattacattttgttatctgtacattctgtgcaagcatgcatttcaagtttttagttcttctgcattcaactttagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAAAAGAGAGAACATGTACTTCAATCATCCTATGTCATATGGTAG
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gtaggctagattatgaaaatattgaaatagatatcaaaactatctgtctcaatgttgttgtttac--caaaggtttaattatgtacttcttaattttagGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG------------------------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acattctgtgcaagcatgcatttcaagtttttagttcttctgcattcaactttagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAAAAGAGAGAACATGTACTTCAATCATCCTATGTCATATGGTAG
atttcaagttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatcaaatttgacaagttctatattacattttgttatctgtacattctgtgcaagcatgcatttcaagtttttagttcttctgcattcaactttagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAAAAGAGAGAACATGTACTTCAATCATCCTATGTCATATGGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA