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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttgttcatctcaatttataggtgtttttgtttctttttatgtggtttgattcagccatatgaggcagaggcttcgagatcatggcgtttcagatccgcgatctcgttgatattcatatgcgtgtttgtgtcgtttgctttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAAGAAGGAAAAGCCAGTAAAGGACCCTAACAAGCCTAAGAGGCCAGCCAGT

Basic information

species Vitis vinifera
transcript Vv18s0122g01190.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135931|gb|CB921269.1|CB921269
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGTGCTGCTGCTACGAAAGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37189590|gb|CF608939.1|CF608939
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGTGCTGCTGCTACGAAAGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71872246|gb|DT021301.1|DT021301
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71866454|gb|DT015509.1|DT015509
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71870392|gb|DT019447.1|DT019447
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|18458654|gb|BM436932.1|BM436932
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGTGCTGCTGCTACGAAAGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71871903|gb|DT020958.1|DT020958
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|110422203|gb|EC988518.1|EC988518
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGTGCTGCTGCTACGAAAGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|349812463|gb|FQ407082.1|FQ407082
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|77587638|gb|DV222996.1|DV222996
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|349812462|gb|FQ407081.1|FQ407081
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|349808030|gb|FQ402421.1|FQ402421
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71870289|gb|DT019344.1|DT019344
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71875149|gb|DT024204.1|DT024204
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71869195|gb|DT018250.1|DT018250
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71872390|gb|DT021445.1|DT021445
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|30321835|gb|CD005097.1|CD005097
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|110378901|gb|EC944058.1|EC944058
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|30136340|gb|CB921678.1|CB921678
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|29781814|gb|CB346592.2|CB346592
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|34544994|gb|CF513226.1|CF513226
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71870838|gb|DT019893.1|DT019893
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37188038|gb|CF607389.1|CF607389
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|110701263|gb|EE078641.1|EE078641
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|110359145|gb|EC920159.1|EC920159
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71877377|gb|DT026432.1|DT026432
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37187271|gb|CF606624.1|CF606624
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|110727673|gb|EE104704.1|EE104704
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|27586818|gb|CB009513.1|CB009513
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71871069|gb|DT020124.1|DT020124
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|30125574|gb|CB910913.1|CB910913
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGTGCTGCTGCTACGAAAGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37188411|gb|CF607760.1|CF607760
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71872295|gb|DT021350.1|DT021350
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71877289|gb|DT026344.1|DT026344
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37190659|gb|CF610008.1|CF610008
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|77584467|gb|DV221302.1|DV221302
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71867293|gb|DT016348.1|DT016348
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|26266952|gb|CA818015.1|CA818015
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGTAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71879402|gb|DT028457.1|DT028457
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|34545986|gb|CF514218.1|CF514218
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|349812002|gb|FQ410799.1|FQ410799
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37189938|gb|CF609287.1|CF609287
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGTGCTGCTGCTACGAAAGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|30135991|gb|CB921329.1|CB921329
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGTGCTGCTGCTACGAAAGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71873912|gb|DT022967.1|DT022967
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|110688346|gb|EE066794.1|EE066794
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|349822310|gb|FQ412574.1|FQ412574
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37188583|gb|CF607932.1|CF607932
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|71869029|gb|DT018084.1|DT018084
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|110725319|gb|EE101688.1|EE101688
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|77579649|gb|DV218677.1|DV218677
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37187855|gb|CF607208.1|CF607208
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|30125704|gb|CB911043.1|CB911043
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
EST: gi|37189435|gb|CF608784.1|CF608784
EST:     GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAA                         GCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA
genomic: GCCATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAgtgagttttg ... tttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccgcgatctcgttgatattcatatgcgtgtttgtgtcgtttgctttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAAGAAGGAAAAGCCAGTAAAGGACCCTAACAAGCCTAAGAGGCCAGCCAGT
           cgttgat  putative branch site (score: 5)
                                        tttgcttt  putative PPT
                atattcatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttttgttcatctcaatttataggtgtttttgtttctttttatgtggtttgattcagccatatgaggcagaggcttcgagatcatggcgtttcagatccgcgatctcgttgatattcatatgcgtgtttgtgtcgtttgctttgtggtagGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAAGAAGGAAAAGCCAGTAAAGGACCCTAACAAGCCTAAGAGGCCAGCCAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG