1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgaatttatttattttcctcaatttccatgcttttcctgttatgagtcactgatatttatgggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG
species | Vitis vinifera |
transcript | Vv18s0122g00680.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAG GTTGTGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCTEST: gi|351028617|gb|FQ446290.1|FQ446290
genomic: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAGgtttgaattt ... gggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCT
EST: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAG GTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCTEST: gi|349827467|gb|FQ422335.1|FQ422335
genomic: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAGgtttgaattt ... gggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCT
EST: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAG GTTGTGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCTEST: gi|351029607|gb|FQ427447.1|FQ427447
genomic: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAGgtttgaattt ... gggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCT
EST: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAG GTTGTGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCTEST: gi|351014409|gb|FQ437411.1|FQ437411
genomic: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAGgtttgaattt ... gggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCT
EST: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAG GTTGTGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCTEST: gi|349832962|gb|FQ423084.1|FQ423084
genomic: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAGgtttgaattt ... gggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCT
EST: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAG GTTGTGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCT
genomic: TCCTCTCCGTTCTGGGTCCTGCGACTTCTCAGCTTATTCGAGTAAAAAAGgtttgaattt ... gggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCT
tcctcaatttccatgcttttcctgttatgagtcactgatatttatgggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG
cactgat putative branch site (score: 3)
tgatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaatttatttattttcctcaatttccatgcttttcctgttatgagtcactgatatttatgggttttgagGTTATGGGTCAAGAACCGGGAAATGTGGAAAAAAGCAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA