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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctttttgggtcatgtgatcaattatgtctattgagttgcttgcttagtttaacatgattctcagtatgtgaacgaagcatgttgggccagtacatattgttgccgttcttactaatagggagaagtgtctatgtatctaagctgactctgagcttataaacagAAATGGATCTCGATTAGGCCATGATACTATTGTTGATGGTATGGCCAAAGATGGCCTCTGGGATGTTTACAACGATTTTGGAATGGCAATTTGTGCAGAA

Basic information

species Vitis vinifera
transcript Vv18s0089g00570.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g00570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 3'ss of exon 5
gttagctttttgggtcatgtgatcaattatgtctattgagttgcttgcttagtttaacatgattctcagtatgtgaacgaagcatgttgggccagtacatattgttgccgttcttactaatagggagaagtgtctatgtatctaagctgactctgagcttataaacagAAATGGATCTCGATTAGGCCATGATACTATTGTTGATGGTATGGCCAAAGATGGCCTCTGGGATGTTTACAACGATTTTGGAATGGCAATTTGTGCAGAA
                                        |  ||    || ||  ||||  |||||||| ||  |   ||            | || ||   |||   ||| |  || ||   |   ||| |  || ||| || | |  |               ||||| |||||||| || || ||||| ||| |||||||||| |||   ||||||||||| |||||||| |||   |||||||  |||| || |||||| || 
--------------------------------------cttcactgtggtaattagacatatttctcagtttgaaatttaa------------aatatatgaggttcttgttttggcttat---gtacagttttaatttatgtatgtttgc---------------agAAAAGGATCTCGTTTTGGACATGACACTCTTGTTGATGGCATGCTTAAAGATGGCCTTTGGGATGTATACGGTGATTTTGCCATGGGAAATTGTGCTGAG

upper sequence: Vv18s0089g00570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G39870.1 (Glycine max), 3'ss of exon 5
gttagctttttgggtcatgtgatcaattatgtctattgagttgcttgcttagtttaacatgattctcagtatgtgaacgaagcatgttgggccagtacatattgttgccgttcttactaatagggagaagtgtctatgtatctaagctgactctgagcttataaacagAAATGGATCTCGATTAGGCCATGATACTATTGTTGATGGTATGGCCAAAGATGGCCTCTGGGATGTTTACAACGATTTTGGAATGGCAATTTGTGCAGAA
                                                              | || |     || | |||           || ||||| || ||    |  ||  | ||   ||| |    | || | |||      | ||||   |   |||||| || ||||||||||  || || ||||| ||  |||||||||||| |||||||||||| |||||||| || ||  | ||||| ||||    |||||| |||
--------------------------------------------------------------tgcttaaacattggatgaaatcccacta-tcattacattttttttggttagttgttgatgttgagtatcacc-atat-tctgtatatattctg---tctaaaacagGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAA

upper sequence: Vv18s0089g00570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G00910.1 (Glycine max), 3'ss of exon 5
gttagctttttgggtcatgtgatcaattatgtctattgagttgcttgcttagtttaacatgattctcagtatgtgaacgaagcatgttgggccagtaca--tattgttgccgttcttactaatagggagaagtgtctatgtatctaagctgactctgagcttataaacagAAATGGATCTCGATTAGGCCATGATACTATTGTTGATGGTATGGCCAAAGATGGCCTCTGGGATGTTTACAACGATTTTGGAATGGCAATTTGTGCAGAA
                                                                    ||   | |||   | |||     ||| ||    || | ||       |   || |   |   ||| |||   |||    ||  |   || |  || |||||| || || ||||| |  || |||||||| ||  |||||||||||| |||||||||||| |||||||| || ||  | || || |||| | | ||||| |||
--------------------------------------------------------------------gtgcttaaacattggatgaaatcccactatcattacttttttttggttagttattgatgttgagtatctccatattct-gcatatattgtgtcta-aaacagGAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTCGGCATGGGAGTATGTGCCGAA

upper sequence: Vv18s0089g00570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S160_44V6.2 (Physcomitrella patens), 3'ss of exon 4
gttagctttttgggtcatgtgatcaattatgtctattgagttgcttgcttagtttaacatgattctcagtatgtgaacgaagcatgttgggccagtacatattgttgccgttcttactaatagggagaagtgtctatgtatctaagctgactctgagcttataaacagAAATGGATCTCGATTAGGCCATGATACTATTGTTGATGGTATGGCCAAAGATGGCCTCTGGGATGTTTACAACGATTTTGGAATGGCAATTTGTGCAGAA
                                                        |    | ||      ||  | ||||| |||  |     || |     |||   | ||||    |||    || ||   | |  | |||  ||||    |||    ||  ||||  ||| |  || || || || |      |||| |||||||||   || || ||||||||||||||||||||||||| ||  ||||  ||   ||| || 
-------------------------------------------------------tatggaactcctttattgcaaccgaaggatg--gatttcgtgcgag--gttcttgatcttgt--atatcttgacgt---tgttaacctattctgaactcgag----tatgcagAGGTGGCTTACGCTTTGGTCACGGAGAGGTTGTGGATGGTATGTTAAAGGACGGCCTCTGGGATGTTTACAACGATTATGCCATGGGCATGGCTGCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactaatagggagaagtgtctatgtatctaagctgactctgagcttataaacagAAATGGATCTCGATTAGGCCATGATACTATTGTTGATGGTATGGCCAAAGATGGCCTCTGGGATGTTTACAACGATTTTGGAATGGCAATTTGTGCAGAA
                                             ttataaaca  TA-rich tract