Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgatgtattagatataaaagttcttttataccaactatgctttgtatttgatgatggtgcttaaacttttgtgcagGATTCAGAATGTGACACACAAACGGGAATCAGTAAAATTAATATTCCAGGAAGTAGCGGAATTCCAAGGTGGGTATCCTATCAGAAAATGGGGAACCATA

Basic information

species Vitis vinifera
transcript Vv18s0089g00550.t01
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttataccaactatgctttgtatttgatgatggtgcttaaacttttgtgcagGATTCAGAATGTGACACACAAACGGGAATCAGTAAAATTAATATTCCAGGAAGTAGCGGAATTCCAAGGTGGGTATCCTATCAGAAAATGGGGAACCATA
                        atttgat  putative branch site (score: 5)
                                            cttttgt  putative PPT
                                       ttaaactttt  TA-rich tract